Evolution of biomolecular networks: lessons from metabolic and protein interactions (Q37620156)

21 August 2017

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title

Evolution of biomolecular networks: lessons from metabolic and protein interactions (English)

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21 August 2017

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21 August 2017

Takuji Yamada

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21 August 2017

language of work or name

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1 November 2009

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Nature Reviews Molecular Cell Biology

21 August 2017

published in

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21 August 2017

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21 August 2017

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21 August 2017

page(s)

791-803

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Collective dynamics of 'small-world' networks

21 August 2017

cites work

1 reference

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

31 March 2020

1 reference

A comprehensive two-hybrid analysis to explore the yeast protein interactome

31 March 2020

1 reference

The protein-protein interaction map of Helicobacter pylori

31 March 2020

1 reference

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

31 March 2020

1 reference

A protein interaction map of Drosophila melanogaster

31 March 2020

1 reference

Towards a proteome-scale map of the human protein–protein interaction network

31 March 2020

1 reference

A human protein-protein interaction network: a resource for annotating the proteome

31 March 2020

1 reference

Interaction network containing conserved and essential protein complexes in Escherichia coli

31 March 2020

1 reference

Large-scale identification of protein-protein interaction of Escherichia coli K-12

31 March 2020

1 reference

Functional organization of the yeast proteome by systematic analysis of protein complexes

31 March 2020

1 reference

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

31 March 2020

1 reference

Proteome survey reveals modularity of the yeast cell machinery

31 March 2020

1 reference

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

31 March 2020

1 reference

An in vivo map of the yeast protein interactome

31 March 2020

1 reference

Metabolic control and its analysis. Additional relationships between elasticities and control coefficients.

31 March 2020

1 reference

A computer program for the algebraic determination of control coefficients in Metabolic Control Analysis

31 March 2020

1 reference

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles

31 March 2020

1 reference

A network perspective on the evolution of metabolism by gene duplication.

31 March 2020

1 reference

Enzyme recruitment in evolution of new function

31 March 2020

1 reference

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

31 March 2020

1 reference

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

31 March 2020

1 reference

Global reconstruction of the human metabolic network based on genomic and bibliomic data

31 March 2020

1 reference

Conserved patterns of protein interaction in multiple species

31 March 2020

1 reference

KEGG for linking genomes to life and the environment

31 March 2020

1 reference

Reactome: a knowledgebase of biological pathways

31 March 2020

1 reference

The Database of Interacting Proteins: 2004 update

31 March 2020

1 reference

STRING 8--a global view on proteins and their functional interactions in 630 organisms

31 March 2020

1 reference

BIOCHEMISTRY: Not Comparable, But Complementary

31 March 2020

1 reference

High-quality binary protein interaction map of the yeast interactome network

31 March 2020

1 reference

Comparative assessment of large-scale data sets of protein-protein interactions

31 March 2020

1 reference

Gaining confidence in high-throughput protein interaction networks

31 March 2020

1 reference

The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli

31 March 2020

1 reference

The large-scale organization of metabolic networks

31 March 2020

1 reference

Hierarchical organization of modularity in metabolic networks

31 March 2020

1 reference

Network biology: understanding the cell's functional organization

31 March 2020

1 reference

The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model

31 March 2020

1 reference

How the global structure of protein interaction networks evolves

31 March 2020

1 reference

Pathway evolution, structurally speaking

31 March 2020

1 reference

Network-based approaches for linking metabolism with environment

31 March 2020

1 reference

Metabolites: a helping hand for pathway evolution?

31 March 2020

1 reference

On the Evolution of Biochemical Syntheses

31 March 2020

1 reference

On earlier states of the biochemical system

31 March 2020

1 reference

On the origin of metabolic pathways

31 March 2020

1 reference

Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways

31 March 2020

1 reference

The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli

31 March 2020

1 reference

Evolution of enzymes in metabolism: a network perspective.

31 March 2020

1 reference

The effect of oxygen on biochemical networks and the evolution of complex life

31 March 2020

1 reference

Large-scale reconstruction and phylogenetic analysis of metabolic environments

31 March 2020

1 reference

Quantifying environmental adaptation of metabolic pathways in metagenomics

31 March 2020

1 reference

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

31 March 2020

1 reference

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

31 March 2020

1 reference

Computational characterization of multiple Gag-like human proteins

31 March 2020

1 reference

Gene essentiality, gene duplicability and protein connectivity in human and mouse

31 March 2020

1 reference

Low duplicability and network fragility of cancer genes

31 March 2020

1 reference

The evolution of domain-content in bacterial genomes

31 March 2020

1 reference

Toolbox model of evolution of prokaryotic metabolic networks and their regulation.

31 March 2020

1 reference

Prediction of effective genome size in metagenomic samples

31 March 2020

1 reference

Genome-wide experimental determination of barriers to horizontal gene transfer.

31 March 2020

1 reference

Protein Function, Connectivity, and Duplicability in Yeast

31 March 2020

1 reference

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

31 March 2020

1 reference

Lethality and centrality in protein networks

31 March 2020

1 reference

Evolution and topology in the yeast protein interaction network

31 March 2020

1 reference

Modularity and evolutionary constraint on proteins

31 March 2020

1 reference

A single determinant dominates the rate of yeast protein evolution

31 March 2020

1 reference

What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?

31 March 2020

1 reference

Impacts of yeast metabolic network structure on enzyme evolution.

31 March 2020

1 reference

Complex genomic rearrangements lead to novel primate gene function

31 March 2020

1 reference

Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context

31 March 2020

1 reference

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

31 March 2020

1 reference

The INO80 chromatin remodeling complex in transcription, replication and repair

31 March 2020

1 reference

In and out: histone variant exchange in chromatin

31 March 2020

1 reference

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

31 March 2020

1 reference

Histone octamer transfer by a chromatin-remodeling complex

31 March 2020

1 reference

Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding.

31 March 2020

1 reference

The structure of nucleosome assembly protein 1.

31 March 2020

1 reference

A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly

31 March 2020

1 reference

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

31 March 2020

1 reference

MULTIFACTORIAL GENETICSUNDERSTANDING QUANTITATIVE GENETIC VARIATION

31 March 2020

1 reference

Specificity and stability in topology of protein networks

31 March 2020

1 reference

Structural comparison of metabolic networks in selected single cell organisms

31 March 2020

1 reference

Motifs, modules and games in bacteria

31 March 2020

1 reference

The evolution of modularity in bacterial metabolic networks.

31 March 2020

1 reference

Protein complexes and functional modules in molecular networks

31 March 2020

1 reference

A metabolic network in the evolutionary context: multiscale structure and modularity

31 March 2020

1 reference

Quantifying modularity in the evolution of biomolecular systems

31 March 2020

1 reference

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae

31 March 2020

1 reference

Genome evolution reveals biochemical networks and functional modules

31 March 2020

1 reference

Extraction of phylogenetic network modules from the metabolic network

31 March 2020

1 reference

Identification and analysis of evolutionarily cohesive functional modules in protein networks

31 March 2020

1 reference

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

31 March 2020

1 reference

Cohesive versus flexible evolution of functional modules in eukaryotes

31 March 2020

1 reference

Environmental variability and modularity of bacterial metabolic networks

31 March 2020

1 reference

Spontaneous evolution of modularity and network motifs

31 March 2020

1 reference

Towards cellular systems in 4D.

31 March 2020

1 reference

Global analysis of the genetic network controlling a bacterial cell cycle

31 March 2020

1 reference

Dynamic Complex Formation During the Yeast Cell Cycle

31 March 2020

1 reference

Co-evolution of transcriptional and post-translational cell-cycle regulation

31 March 2020

1 reference

Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis

31 March 2020

1 reference

Systematic determination of patterns of gene expression during Drosophila embryogenesis

31 March 2020

1 reference

A gene expression map of Arabidopsis thaliana development

31 March 2020

1 reference

4DXpress: a database for cross-species expression pattern comparisons

31 March 2020

1 reference

A DNA microarray survey of gene expression in normal human tissues

31 March 2020

1 reference

Genome-wide profiling of gene expression in 29 normal human tissues with a cDNA microarray

31 March 2020

1 reference

Emergence of Scaling in Random Networks

31 March 2020

1 reference

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

31 March 2020

1 reference

High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe

31 March 2020

1 reference

Structure of the molecular chaperone prefoldin: unique interaction of multiple coiled coil tentacles with unfolded proteins

31 March 2020

1 reference

On the strength of connectedness of a random graph

31 March 2020

1 reference

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Identifiers

DOI

10.1038/NRM2787

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21 August 2017

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