novoBreak: local assembly for breakpoint detection in cancer genomes (Q37544937)

20 August 2017

novoBreak: local assembly for breakpoint detection in cancer genomes (English)

1 reference

20 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Zechen Chong

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Jue Ruan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Wanding Zhou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Tenghui Chen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Xian Fan

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Junjie Chen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Ken Chen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

publication date

28 November 2016

1 reference

20 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

65-67

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

6 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

TIGRA: a targeted iterative graph routing assembler for breakpoint assembly

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

DELLY: structural variant discovery by integrated paired-end and split-read analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Assemblathon 1: a competitive assessment of de novo short read assembly methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

A framework for variation discovery and genotyping using next-generation DNA sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Limitations of next-generation genome sequence assembly

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Complex landscapes of somatic rearrangement in human breast cancer genomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

A comprehensive catalogue of somatic mutations from a human cancer genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

The impact of translocations and gene fusions on cancer causation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Genome structural variation discovery and genotyping

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Global optimization of somatic variant identification in cancer genomes with a global community challenge

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Assembling millions of short DNA sequences using SSAKE.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5199621

Space/time trade-offs in hash coding with allowable errors

1 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.4084

21 January 2018

Identifiers

DOI

10.1038/NMETH.4084

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

6 June 2020

1049167515

0 references

Fatcat ID

release_jwbfs6sosrgahoq5cdzssolgpq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jwbfs6sosrgahoq5cdzssolgpq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

27892959

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27892959%20AND%20SRC:MED&resulttype=core&format=json