Finding and characterizing tunnels in macromolecules with application to ion channels and pores. (Q37277057)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

title

Finding and characterizing tunnels in macromolecules with application to ion channels and pores (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

Kim A Sharp

1 reference

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15 January 2020

language of work or name

English

0 references

publication date

1 January 2009

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15 January 2020

1 reference

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15 January 2020

volume

1 reference

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15 January 2020

issue

1 reference

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15 January 2020

page(s)

632-645

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

A continuum method for determining membrane protein insertion energies and the problem of charged residues

15 January 2020

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6 September 2017

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6 September 2017

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Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation

6 September 2017

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6 September 2017

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Crystal structure of the monomeric porin OmpG

6 September 2017

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6 September 2017

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High resolution crystal structures and molecular dynamics studies reveal substrate binding in the porin Omp32.

6 September 2017

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6 September 2017

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The cooperative voltage sensor motion that gates a potassium channel

6 September 2017

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6 September 2017

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The progress of membrane protein structure determination

6 September 2017

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The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures

6 September 2017

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Structural genomics of membrane proteins

6 September 2017

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6 September 2017

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6 September 2017

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Pore- and state-dependent cadmium block of I(Ks) channels formed with MinK-55C and wild-type KCNQ1 subunits

6 September 2017

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Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channel

6 September 2017

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Structural basis of water-specific transport through the AQP1 water channel

6 September 2017

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Crystal structure of Omp32, the anion-selective porin from Comamonas acidovorans, in complex with a periplasmic peptide at 2.1 A resolution

6 September 2017

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Structure and function of bacterial outer membrane proteins: barrels in a nutshell

6 September 2017

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Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage

6 September 2017

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Crystal structure and functional characterization of OmpK36, the osmoporin of Klebsiella pneumoniae

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

6 September 2017

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Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure

6 September 2017

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Crystal structures explain functional properties of two E. coli porins

6 September 2017

1 reference

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Structure of porin refined at 1.8 A resolution

6 September 2017

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Molecular mechanisms for proton transport in membranes

6 September 2017

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Structure of the membrane channel porin from Rhodopseudomonas blastica at 2.0 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2716472

Identification of tunnels in proteins, nucleic acids, inorganic materials and molecular ensembles

26 June 2018

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Travel depth, a new shape descriptor for macromolecules: application to ligand binding.

3 September 2018

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Homology modeling of representative subfamilies of Arabidopsis major intrinsic proteins. Classification based on the aromatic/arginine selectivity filter

3 September 2018

1 reference

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Identification of protein side chains near the membrane-aqueous interface: a site-directed spin labeling study of KcsA.

3 September 2018

1 reference

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Open "back door" in a molecular dynamics simulation of acetylcholinesterase.

3 September 2018

1 reference

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Electron crystallography of membrane proteins

3 September 2018

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Ez, a Depth-dependent Potential for Assessing the Energies of Insertion of Amino Acid Side-chains into Membranes: Derivation and Applications to Determining the Orientation of Transmembrane and Interfacial Helices

20 October 2018

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The Geometry of the Ribosomal Polypeptide Exit Tunnel

3 December 2018

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Three-dimensional structure of bovine cytochrome bc1 complex by electron cryomicroscopy and helical image reconstruction

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18849407

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The influence of geometry, surface character, and flexibility on the permeation of ions and water through biological pores

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18849407

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.108.135970

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

18849407

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18849407%20AND%20SRC:MED&resulttype=core&format=json