Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array (Q37113642)

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scientific article published on 06 August 2013

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English	Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array	scientific article published on 06 August 2013

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3750594

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Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array (English)

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18 August 2017

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Erik B van den Akker

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Erik B van den Akker

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Roderick C Slieker

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Roderick C Slieker

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Jelle J Goeman

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Jelle J Goeman

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Ingrid Meulenbelt

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Ingrid Meulenbelt

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Judith Bovée

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Judith Vmg Bovée

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Bastiaan T. Heijmans

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Bastiaan T Heijmans

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Eline Slagboom

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P Eline Slagboom

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J Wouter Jukema

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J Wouter Jukema

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Hein Putter

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Hein Putter

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H. Eka D. Suchiman

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H Eka D Suchiman

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Steffan D Bos

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Steffan D Bos

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Rudolf P Talens

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Rudolf P Talens

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Ruud van der Breggen

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Ruud van der Breggen

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18 August 2017

Eric-Wubbo Lameijer

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Eric-Wubbo Lameijer

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18 August 2017

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Yanju Zhang

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11

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18 August 2017

publication date

6 August 2013

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18 August 2017

published in

Epigenetics & Chromatin

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18 August 2017

volume

6

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18 August 2017

issue

1

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18 August 2017

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26

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The Genotype-Tissue Expression (GTEx) project

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Systematic localization of common disease-associated variation in regulatory DNA

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

The accessible chromatin landscape of the human genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

An integrated encyclopedia of DNA elements in the human genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Quantitative cross-validation and content analysis of the 450k DNA methylation array from Illumina, Inc.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Epigenetic features are significantly associated with alternative splicing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Programming of DNA methylation patterns

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

CpG methylation recruits sequence specific transcription factors essential for tissue specific gene expression

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

DNA methylation signatures in development and aging of the human prefrontal cortex

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Commentary: The seven plagues of epigenetic epidemiology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

REVIGO summarizes and visualizes long lists of gene ontology terms

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Cell type-specific DNA methylation at intragenic CpG islands in the immune system.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

The DNA methylome of human peripheral blood mononuclear cells

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Conserved role of intragenic DNA methylation in regulating alternative promoters

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

GREAT improves functional interpretation of cis-regulatory regions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Redefining CpG islands using hidden Markov models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Dynamic changes in the human methylome during differentiation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Genetics and epigenetics: stability and plasticity during cellular differentiation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

ASTD: The Alternative Splicing and Transcript Diversity database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Alternative isoform regulation in human tissue transcriptomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Male-pattern baldness susceptibility locus at 20p11.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

TiGER: a database for tissue-specific gene expression and regulation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

CG dinucleotide clustering is a species-specific property of the genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

CpGcluster: a distance-based algorithm for CpG-island detection

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

The human genome browser at UCSC

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

14 September 2017

DNA-binding factors shape the mouse methylome at distal regulatory regions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

3 September 2018

Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3750594

retrieved

3 September 2018

Buccal swabs but not mouthwash samples can be used to obtain pretransplant DNA fingerprints from recipients of allogeneic bone marrow transplants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23919675

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High microsatellite and SNP genotyping success rates established in a large number of genomic DNA samples extracted from mouth swabs and genotypes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23919675

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tissue-specific demethylation in CpG-poor promoters during cellular differentiation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23919675

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Docosahexaenoic acid suppresses apolipoprotein A-I gene expression through hepatocyte nuclear factor-3β

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23919675

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of the Infinium Methylation 450K technology

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/23919675

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1756-8935-6-26

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Europe PubMed Central

PMC publication ID

3750594

retrieved

18 August 2017

Dimensions Publication ID

1023582179

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PMC publication ID

3750594

1 reference

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Europe PubMed Central

PMC publication ID

3750594

retrieved

18 August 2017

PubMed publication ID

23919675

1 reference

stated in

Europe PubMed Central

PMC publication ID

3750594

retrieved

18 August 2017

ResearchGate publication ID

255688377

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