The three-dimensional genome: principles and roles of long-distance interactions. (Q36952028)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

review article

1 reference

title

The three-dimensional genome: principles and roles of long-distance interactions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Victor G Corces

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

publication date

4 February 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

Current Opinion in Cell Biology

7 March 2020

published in

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7 March 2020

volume

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7 March 2020

page(s)

8-14

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

Formation of Chromosomal Domains by Loop Extrusion.

7 March 2020

cites work

1 reference

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CTCF Binding Polarity Determines Chromatin Looping.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Long-Range Chromatin Interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Control of Chromatin Structure by Long Noncoding RNA.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Identification of hierarchical chromatin domains

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Boundary Associated Long Noncoding RNA Mediates Long-Range Chromosomal Interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

A CTCF Code for 3D Genome Architecture

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

An Overview of Genome Organization and How We Got There: from FISH to Hi-C

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Condensin-driven remodelling of X chromosome topology during dosage compensation.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Architectural proteins, transcription, and the three-dimensional organization of the genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Chromatin architecture reorganization during stem cell differentiation.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Long noncoding RNAs: an emerging link between gene regulation and nuclear organization

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genome-wide map of regulatory interactions in the human genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Insulator function and topological domain border strength scale with architectural protein occupancy

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Identification of alternative topological domains in chromatin

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

CTCF: an architectural protein bridging genome topology and function

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

A high-resolution map of the three-dimensional chromatin interactome in human cells

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Topological domains in mammalian genomes identified by analysis of chromatin interactions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Three-dimensional folding and functional organization principles of the Drosophila genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Insulators as mediators of intra- and inter-chromosomal interactions: a common evolutionary theme

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

A three-dimensional model of the yeast genome

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Chromosomal Loop Domains Direct the Recombination of Antigen Receptor Genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Loss of the insulator protein CTCF during nematode evolution

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4887315

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26852111

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26852111

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CEB.2016.01.009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

26852111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26852111%20AND%20SRC:MED&resulttype=core&format=json