NF-κB oscillations translate into functionally related patterns of gene expression. (Q36703665)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26765569%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

NF-κB oscillations translate into functionally related patterns of gene expression (English)

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5 March 2020

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5 March 2020

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5 March 2020

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5 March 2020

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5 March 2020

Arianna Piffer

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5 March 2020

language of work or name

English

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publication date

14 January 2016

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5 March 2020

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volume

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5 March 2020

page(s)

e09100

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Distinct single-cell signaling characteristics are conferred by the MyD88 and TRIF pathways during TLR4 activation.

5 March 2020

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In vitro γ-ray-induced inflammatory response is dominated by culturing conditions rather than radiation exposures

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30 September 2017

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Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

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High-throughput analysis of NF-κB dynamics in single cells reveals basal nuclear localization of NF-κB and spontaneous activation of oscillations

30 September 2017

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30 September 2017

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Switching of the relative dominance between feedback mechanisms in lipopolysaccharide-induced NF-κB signaling

30 September 2017

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Functional roles of pulsing in genetic circuits

30 September 2017

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Direct observation of frequency modulated transcription in single cells using light activation.

30 September 2017

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RNA splicing regulates the temporal order of TNF-induced gene expression

30 September 2017

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Encoding and decoding cellular information through signaling dynamics

30 September 2017

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p53 dynamics control cell fate

30 September 2017

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Signal-dependent dynamics of transcription factor translocation controls gene expression

30 September 2017

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Entrainment of a population of synthetic genetic oscillators

30 September 2017

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Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output

30 September 2017

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An integrative clustering and modeling algorithm for dynamical gene expression data

30 September 2017

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Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

30 September 2017

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Mammalian genes are transcribed with widely different bursting kinetics

30 September 2017

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NF-κB addiction and its role in cancer: ‘one size does not fit all’

30 September 2017

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UV-induced histone H2AX phosphorylation and DNA damage related proteins accumulate and persist in nucleotide excision repair-deficient XP-B cells

30 September 2017

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Oscillatory control of signalling molecules

30 September 2017

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Single-cell NF-kappaB dynamics reveal digital activation and analogue information processing.

30 September 2017

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Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs

30 September 2017

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A synchronized quorum of genetic clocks

30 September 2017

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Rapid and sustained nuclear-cytoplasmic ERK oscillations induced by epidermal growth factor

30 September 2017

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Sustained oscillations of NF-kappaB produce distinct genome scanning and gene expression profiles

30 September 2017

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Kinetic control of negative feedback regulators of NF-kappaB/RelA determines their pathogen- and cytokine-receptor signaling specificity

30 September 2017

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Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription

30 September 2017

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New regulators of NF-kappaB in inflammation

30 September 2017

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Frequency-modulated nuclear localization bursts coordinate gene regulation

30 September 2017

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Encoding NF-kappaB temporal control in response to TNF: distinct roles for the negative regulators IkappaBalpha and A20.

30 September 2017

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NF-kappaB and cancer-identifying targets and mechanisms

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Single TNFalpha trimers mediating NF-kappaB activation: stochastic robustness of NF-kappaB signaling.

30 September 2017

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Tunability and noise dependence in differentiation dynamics

30 September 2017

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H2AX phosphorylation within the G1 phase after UV irradiation depends on nucleotide excision repair and not DNA double-strand breaks

30 September 2017

1 reference

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Oscillations and variability in the p53 system

30 September 2017

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Nuclear factor-kappaB in cancer development and progression

30 September 2017

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Stochastic regulation in early immune response

30 September 2017

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A TNF-induced gene expression program under oscillatory NF-kappaB control

30 September 2017

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DNA labeling in living cells

30 September 2017

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Circadian rhythms from multiple oscillators: lessons from diverse organisms

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Ultraviolet radiation-mediated damage to cellular DNA.

30 September 2017

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Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling.

30 September 2017

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Oscillations in NF-kappaB signaling control the dynamics of gene expression

30 September 2017

1 reference

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UV-induced DNA damage and repair: a review

30 September 2017

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The IkappaB-NF-kappaB signaling module: temporal control and selective gene activation

30 September 2017

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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

30 September 2017

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Antigen Structural Requirements for Recognition by a Cyclobutane Thymine Dimer-Specific Monoclonal Antibody

30 September 2017

1 reference

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Inducible nuclear expression of newly synthesized I kappa B alpha negatively regulates DNA-binding and transcriptional activities of NF-kappa B.

30 September 2017

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30 September 2017

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Standard fluorescent imaging of live cells is highly genotoxic

30 September 2017

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Anthracyclines induce double-strand DNA breaks at active gene promoters

28 June 2018

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Noise facilitates transcriptional control under dynamic inputs

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

A simple model of NF-κB dynamics reproduces experimental observations

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

GFP-p65 knock-in mice as a tool to study NF-kappaB dynamics in vivo

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

Kinetics of gamma-H2AX focus formation upon treatment of cells with UV light and alkylating agents

5 September 2018

1 reference

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Error propagation in relative real-time reverse transcription polymerase chain reaction quantification models: the balance between accuracy and precision.

5 September 2018

1 reference

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Transcriptional stochasticity in gene expression.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

Mathematical model of NF-kappaB regulatory module

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798970

5 September 2018

Identifiers

DOI

10.7554/ELIFE.09100

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26765569%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26765569%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

PubMed publication ID

26765569

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26765569%20AND%20SRC:MED&resulttype=core&format=json