Cooling-induced SUMOylation of EXOSC10 down-regulates ribosome biogenesis. (Q36690979)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26857222%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Cooling-induced SUMOylation of EXOSC10 down-regulates ribosome biogenesis (English)

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7 March 2020

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7 March 2020

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7 March 2020

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7 March 2020

Christopher Mark Smales

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7 March 2020

Diego Peretti

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7 March 2020

Anne Roobol

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7 March 2020

Jo Roobol

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7 March 2020

Anne E Willis

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7 March 2020

language of work or name

English

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publication date

8 February 2016

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7 March 2020

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7 March 2020

volume

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7 March 2020

issue

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7 March 2020

page(s)

623-635

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Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae

7 March 2020

cites work

1 reference

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System-wide identification of wild-type SUMO-2 conjugation sites

30 September 2017

1 reference

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Control of translation in the cold: implications for therapeutic hypothermia.

30 September 2017

1 reference

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RBM3 mediates structural plasticity and protective effects of cooling in neurodegeneration

30 September 2017

1 reference

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Global SUMOylation is a molecular mechanism underlying hypothermia-induced ischemic tolerance

30 September 2017

1 reference

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Protein neddylation: beyond cullin-RING ligases

30 September 2017

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Ribosomal stress activates eEF2K-eEF2 pathway causing translation elongation inhibition and recruitment of terminal oligopyrimidine (TOP) mRNAs on polysomes

30 September 2017

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p58IPK is an inhibitor of the eIF2α kinase GCN2 and its localization and expression underpin protein synthesis and ER processing capacity

30 September 2017

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Uncovering global SUMOylation signaling networks in a site-specific manner

30 September 2017

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Mapping of SUMO sites and analysis of SUMOylation changes induced by external stimuli

30 September 2017

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Structure of an Rrp6–RNA exosome complex bound to poly(A) RNA

30 September 2017

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GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs.

30 September 2017

1 reference

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Proteome-wide identification of SUMO2 modification sites

30 September 2017

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p53 -Dependent and -Independent Nucleolar Stress Responses

30 September 2017

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The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA.

30 September 2017

1 reference

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The eukaryotic RNA exosome

30 September 2017

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The exosome cofactor Rrp47 is critical for the stability and normal expression of its associated exoribonuclease Rrp6 in Saccharomyces cerevisiae.

30 September 2017

1 reference

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Sumoylation: a regulatory protein modification in health and disease

30 September 2017

1 reference

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Detecting endogenous SUMO targets in mammalian cells and tissues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Gradual processing of the ITS1 from the nucleolus to the cytoplasm during synthesis of the human 18S rRNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Active regulator of SIRT1 is required for ribosome biogenesis and function.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Both endonucleolytic and exonucleolytic cleavage mediate ITS1 removal during human ribosomal RNA processing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Crystal structure of an RNA-bound 11-subunit eukaryotic exosome complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Extensive degradation of RNA precursors by the exosome in wild-type cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Moderate hypothermia induces marked increase in levels and nuclear accumulation of SUMO2/3-conjugated proteins in neurons

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Translation suppression promotes stress granule formation and cell survival in response to cold shock

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Attenuation of 40S ribosomal subunit abundance differentially affects host and HCV translation and suppresses HCV replication

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

30 September 2017

1 reference

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Isolation of NEDDylated proteins in human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

SUMO routes ribosome maturation.

30 September 2017

1 reference

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PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

A proteomic screen for nucleolar SUMO targets shows SUMOylation modulates the function of Nop5/Nop58.

30 September 2017

1 reference

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The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L

30 September 2017

1 reference

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Dyskerin ablation in mouse liver inhibits rRNA processing and cell division

30 September 2017

1 reference

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A convergence of rRNA and mRNA quality control pathways revealed by mechanistic analysis of nonfunctional rRNA decay

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

System-wide changes to SUMO modifications in response to heat shock

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

RNA exosome depletion reveals transcription upstream of active human promoters

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

The RNA exosome component hRrp6 is a target for 5-fluorouracil in human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Protein SUMOylation is massively increased in hibernation torpor and is critical for the cytoprotection provided by ischemic preconditioning and hypothermia in SHSY5Y cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

The cold-shock response in cultured mammalian cells: harnessing the response for the improvement of recombinant protein production.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Nuclear export and cytoplasmic processing of precursors to the 40S ribosomal subunits in mammalian cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Broad spectrum identification of cellular small ubiquitin-related modifier (SUMO) substrate proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Increased Transcript Level of RBM3, a Member of the Glycine-Rich RNA-Binding Protein Family, in Human Cells in Response to Cold Stress

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

A glycine-rich RNA-binding protein mediating cold-inducible suppression of mammalian cell growth

30 September 2017

1 reference

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The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Large-scale analysis of lysine SUMOylation by SUMO remnant immunoaffinity profiling.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Eukaryotic elongation factor 2 kinase regulates the cold stress response by slowing translation elongation.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

The RNA exosome promotes transcription termination of backtracked RNA polymerase II.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Transcriptome-wide analysis of exosome targets

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Deep hypothermia markedly activates the small ubiquitin-like modifier conjugation pathway; implications for the fate of cells exposed to transient deep hypothermic cardiopulmonary bypass

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Phospho-regulated SUMO interaction modules connect the SUMO system to CK2 signaling

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Assays for ribosomal RNA processing and ribosome assembly.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Constant darkness is a circadian metabolic signal in mammals

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4793216

Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26857222

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.054411.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26857222%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26857222%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

26857222

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26857222%20AND%20SRC:MED&resulttype=core&format=json