Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay (Q36549689)

14 August 2017

Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay (English)

1 reference

14 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Brandon Chin Sos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Ho-Lim Fung

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Derek Rui Gao

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Trina Faye Osothprarop

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Amirali Kia

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

Molly Min He

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

publication date

4 February 2016

1 reference

14 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

volume

1 reference

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12 June 2020

page(s)

1 reference

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Single-cell chromatin accessibility reveals principles of regulatory variation

12 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

NF-κB and IRF7 pathway activation by Epstein-Barr virus Latent Membrane Protein 1

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Uniform, optimal signal processing of mapped deep-sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

ENCODE data in the UCSC Genome Browser: year 5 update

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Predicting cell-type-specific gene expression from regions of open chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

An expansive human regulatory lexicon encoded in transcription factor footprints

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

The accessible chromatin landscape of the human genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Linear amplification for deep sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Determinants of nucleosome organization in primary human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Preparation of Next-Generation Sequencing Libraries Using Nextera™ Technology: Simultaneous DNA Fragmentation and Adaptor Tagging by In Vitro Transposition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

GREAT improves functional interpretation of cis-regulatory regions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Toll-like receptor agonists synergistically increase proliferation and activation of B cells by epstein-barr virus.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Poly(dA:dT) tracts: major determinants of nucleosome organization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Epstein-barr virus-induced changes in B-lymphocyte gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Circuitry and dynamics of human transcription factor regulatory networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Coupling transcription factor occupancy to nucleosome architecture with DNase-FLASH.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Tn5 transposase active site mutants

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. 1985.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4743176

Tn5 in vitro transposition

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26846207

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13059-016-0882-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

12 June 2020

1021720128

0 references

Fatcat ID

release_mbjtpxmmqvg6tfhjxp7arwwqfq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/mbjtpxmmqvg6tfhjxp7arwwqfq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

PubMed publication ID

26846207

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26846207%20AND%20SRC:MED&resulttype=core&format=json