Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta (Q36526968)

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3 January 2020

title

Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta (English)

1 reference

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3 January 2020

Macaca fascicularis

1 reference

1 reference

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3 January 2020

1 reference

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3 January 2020

Sumio Sugano

1 reference

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3 January 2020

Yutaka Suzuki

1 reference

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3 January 2020

Katsuyuki Hashimoto

1 reference

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3 January 2020

Makoto Hirata

1 reference

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3 January 2020

Reiko Tanuma

1 reference

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3 January 2020

Keiji Terao

1 reference

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3 January 2020

Jun Kusuda

1 reference

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3 January 2020

Yosuke Kameoka

1 reference

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3 January 2020

Munetomo Hida

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18294402%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Itsuro Inoue

1 reference

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3 January 2020

Ichiro Takahashi

series ordinal

1 reference

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3 January 2020

language of work or name

English

0 references

publication date

24 February 2008

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3 January 2020

1 reference

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3 January 2020

volume

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3 January 2020

page(s)

1 reference

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More genes underwent positive selection in chimpanzee evolution than in human evolution

3 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques

30 September 2017

1 reference

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Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

30 September 2017

1 reference

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Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta).

30 September 2017

1 reference

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High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations

30 September 2017

1 reference

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Rate of evolution in brain-expressed genes in humans and other primates

30 September 2017

1 reference

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Mitochondrial DNA variation within and among regional populations of longtail macaques (Macaca fascicularis) in relation to other species of the fascicularis group of macaques

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

30 September 2017

1 reference

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The UCSC genome browser database: update 2007.

30 September 2017

1 reference

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Functionality of intergenic transcription: an evolutionary comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Analysis of 10,000 ESTs from lymphocytes of the cynomolgus monkey to improve our understanding of its immune system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Inferring the mode of speciation from genomic data: a study of the great apes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Entrez Gene: gene-centered information at NCBI

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Global identification of human transcribed sequences with genome tiling arrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Use of primates in research: a global overview

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Complete sequencing and characterization of 21,243 full-length human cDNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Paternal, maternal, and biparental molecular markers provide unique windows onto the evolutionary history of macaque monkeys

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Construction of a Full-Length Enriched and a 5'-End Enriched cDNA Library Using the Oligo-Capping Method

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

NCBI Reference Sequence project: update and current status

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Cynomolgus monkey testicular cDNAs for discovery of novel human genes in the human genome sequence

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Search for genes positively selected during primate evolution by 5'-end-sequence screening of cynomolgus monkey cDNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Prediction of unidentified human genes on the basis of sequence similarity to novel cDNAs from cynomolgus monkey brain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Assignment of 118 novel cDNAs of cynomolgus monkey brain to human chromosomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Repbase update: a database and an electronic journal of repetitive elements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Gene ontology: tool for the unification of biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

PAML: a program package for phylogenetic analysis by maximum likelihood

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Evolution of the primate lineage leading to modern humans: phylogenetic and demographic inferences from DNA sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Comparison of the karyotypes of four Cercopithecoidae: Papio papio, P. anubis, Macaca mulatta, and M. fascicularis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Primate evolution - in and out of Africa

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Molecular phylogeny of macaques: implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Analysis of high density expression microarrays with signed-rank call algorithms

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Extensive nuclear DNA sequence diversity among chimpanzees

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2287170

Direct estimates of human per nucleotide mutation rates at 20 loci causing Mendelian diseases

21 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18294402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Slow molecular clocks in Old World monkeys, apes, and humans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18294402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/18294402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-90

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18294402%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18294402%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

PubMed publication ID

18294402

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18294402%20AND%20SRC:MED&resulttype=core&format=json