A survey of current software for network analysis in molecular biology (Q36405281)

14 August 2017

6 references

30 June 2019

19 September 2019

5 September 2020

2 November 2020

10 November 2020

8 April 2021

A survey of current software for network analysis in molecular biology (English)

1 reference

biomedical investigative technique

14 August 2017

1 reference

PubMed

19 September 2019

gene regulatory network

1 reference

5 September 2020

1 reference

2 November 2020

1 reference

10 November 2020

computational biology

1 reference

8 April 2021

0 references

Sterling Thomas

1 reference

14 August 2017

Danail Bonchev

series ordinal

1 reference

14 August 2017

1 June 2010

7 references

14 August 2017

30 June 2019

19 September 2019

5 September 2020

2 November 2020

10 November 2020

8 April 2021

7 references

14 August 2017

30 June 2019

19 September 2019

5 September 2020

2 November 2020

10 November 2020

8 April 2021

1 reference

14 August 2017

1 reference

14 August 2017

353-360

1 reference

describes a project that uses

14 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Kavosh: a new algorithm for finding network motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Graemlin: general and robust alignment of multiple large interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Modeling cellular machinery through biological network comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

FiatFlux--a software for metabolic flux analysis from 13C-glucose experiments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

MAVisto: a tool for the exploration of network motifs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Functional cartography of complex metabolic networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Hierarchical thinking in network biology: the unbiased modularization of biochemical networks.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Network biology: understanding the cell's functional organization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Flux coupling analysis of genome-scale metabolic network reconstructions.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Modular organization of cellular networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Computational systems biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Network motifs: simple building blocks of complex networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Hierarchical organization of modularity in metabolic networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Network motifs in the transcriptional regulation network of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Collective dynamics of 'small-world' networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

Finding community structure in networks using the eigenvectors of matrices.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

FANMOD: a tool for fast network motif detection

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3500165

10.1186/1479-7364-4-5-353

21 September 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

14 August 2017

0 references

1 reference

14 August 2017

PubMed publication ID

20650822

1 reference