Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient (Q36310383)

13 August 2017

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient (English)

1 reference

13 August 2017

Harm van Bakel

0 references

Robert Sebra

1 reference

13 August 2017

Andrew Kasarskis

1 reference

13 August 2017

Ali Bashir

1 reference

13 August 2017

Oliver Attie

1 reference

13 August 2017

Mitchell Sullivan

1 reference

13 August 2017

Kavindra V Singh

1 reference

13 August 2017

Deena Altman

1 reference

13 August 2017

Theodore Pak

1 reference

13 August 2017

Jayeeta Dutta

1 reference

13 August 2017

Kieran Chacko

1 reference

13 August 2017

Elizabeth Webster

1 reference

13 August 2017

Martha Lewis

1 reference

13 August 2017

Camille Hamula

1 reference

13 August 2017

Kristin W Delli Carpini

1 reference

13 August 2017

Barbara E Murray

1 reference

13 August 2017

Shirish Huprikar

1 reference

13 August 2017

language of work or name

English

0 references

publication date

16 March 2017

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

13 August 2017

e0170449

1 reference

Creative Commons Attribution 4.0 International

13 August 2017

start time

16 March 2017

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

describes a project that uses

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

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Roary: rapid large-scale prokaryote pan genome analysis

30 September 2017

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The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Transmission of methicillin-resistant Staphylococcus aureus via deceased donor liver transplantation confirmed by whole genome sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Prokka: rapid prokaryotic genome annotation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Molecular analysis and distribution of multidrug-resistant Enterococcus faecium isolates belonging to clonal complex 17 in a tertiary care center in Mexico City

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

The comprehensive antibiotic resistance database.

30 September 2017

1 reference

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Microevolutionary events involving narrow host plasmids influences local fixation of vancomycin-resistance in Enterococcus populations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Hybrid error correction and de novo assembly of single-molecule sequencing reads

30 September 2017

1 reference

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A hybrid approach for the automated finishing of bacterial genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Comparative analysis of the first complete Enterococcus faecium genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

BLAST+: architecture and applications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Fast and accurate short read alignment with Burrows-Wheeler transform

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Assessing the reliability of eBURST using simulated populations with known ancestry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

A simple and robust statistical test for detecting the presence of recombination

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Mauve: multiple alignment of conserved genomic sequence with rearrangements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Multilocus sequence typing scheme for Enterococcus faecium.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Identification of chromosomal mobile element conferring high-level vancomycin resistance in Enterococcus faecium

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Heterogeneity of the vanA gene cluster in clinical isolates of enterococci from the northeastern United States

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

CDC definitions for nosocomial infections, 1988

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Comparison of genomic DNAs of different enterococcal isolates using restriction endonucleases with infrequent recognition sites

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Molecular epidemiology of vancomycin-resistant enterococcal bacteraemia: results from the Canadian Nosocomial Infection Surveillance Program, 1999-2009.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Donor-derived infections in solid organ transplantation

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Genetic features and molecular epidemiology of Enterococcus faecium isolated in two university hospitals in Brazil

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Tn1546 structures and multilocus sequence typing of vanA-containing enterococci of animal, human and food origin

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

A newly described vancomycin-resistant ST412 Enterococcus faecium predominant in Greek hospitals

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Using MUMmer to identify similar regions in large sequence sets

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5354240

Changes in vancomycin-resistant Enterococcus faecium causing outbreaks in Brazil

22 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28301471

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0170449

1 reference

13 August 2017

0 references

1 reference

13 August 2017

PubMed publication ID

28301471

1 reference