Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences (Q36300722)

13 August 2017

Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences (English)

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13 August 2017

1 reference

Trevor C Charles

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Josh D Neufeld

1 reference

13 August 2017

Katja Engel

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13 August 2017

Jiujun Cheng

1 reference

13 August 2017

Tatyana Romantsov

series ordinal

1 reference

13 August 2017

Andrew C Doxey

series ordinal

1 reference

13 August 2017

David R Rose

series ordinal

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13 August 2017

language of work or name

English

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publication date

8 March 2017

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13 August 2017

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13 August 2017

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13 August 2017

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13 August 2017

e0172545

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Creative Commons Attribution 4.0 International

13 August 2017

start time

8 March 2017

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology

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Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production

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Evaluation of a pooled strategy for high-throughput sequencing of cosmid clones from metagenomic libraries

30 September 2017

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Discovery of novel enzymes with industrial potential from a cold and alkaline environment by a combination of functional metagenomics and culturing

30 September 2017

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CAZyme discovery and design for sweet dreams

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Identification and characterization of an unusual glycosyltransferase-like enzyme with β-galactosidase activity from a soil metagenomic library

30 September 2017

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30 September 2017

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Metagenomic approach for the isolation of a thermostable β-galactosidase with high tolerance of galactose and glucose from soil samples of Turpan Basin

30 September 2017

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30 September 2017

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Cloning and characterization of a novel cold-active glycoside hydrolase family 1 enzyme with β-glucosidase, β-fucosidase and β-galactosidase activities

30 September 2017

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CDD: conserved domains and protein three-dimensional structure

30 September 2017

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Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen.

30 September 2017

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The PhyloPythiaS web server for taxonomic assignment of metagenome sequences

30 September 2017

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Biocatalysts and small molecule products from metagenomic studies

30 September 2017

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SignalP 4.0: discriminating signal peptides from transmembrane regions

30 September 2017

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Construction and evaluation of pMycoFos, a fosmid shuttle vector for Mycobacterium spp. with inducible gene expression and copy number control

30 September 2017

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Metagenomic analyses: past and future trends

30 September 2017

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Wide Host-Range Cloning for Functional Metagenomics

30 September 2017

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Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species

30 September 2017

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A novel metagenome-derived beta-galactosidase: gene cloning, overexpression, purification and characterization

30 September 2017

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3DLigandSite: predicting ligand-binding sites using similar structures

30 September 2017

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Ab initio gene identification in metagenomic sequences

30 September 2017

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A human gut microbial gene catalogue established by metagenomic sequencing

30 September 2017

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Fermentation of lactose to bio-ethanol by yeasts as part of integrated solutions for the valorisation of cheese whey

30 September 2017

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Expanding small-molecule functional metagenomics through parallel screening of broad-host-range cosmid environmental DNA libraries in diverse proteobacteria

30 September 2017

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Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries

30 September 2017

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Protein structure prediction on the Web: a case study using the Phyre server

30 September 2017

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Structural insights into glycoside hydrolase family 32 and 68 enzymes: functional implications

30 September 2017

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Metagenomics for mining new genetic resources of microbial communities

30 September 2017

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

30 September 2017

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An integrated approach to functional genomics: construction of a novel reporter gene fusion library for Sinorhizobium meliloti

30 September 2017

1 reference

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Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants

30 September 2017

1 reference

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Screening a wide host-range, waste-water metagenomic library in tryptophan auxotrophs of Rhizobium leguminosarum and of Escherichia coli reveals different classes of cloned trp genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Quantifying the accessibility of the metagenome by random expression cloning techniques.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Genetically modified bacterial strains and novel bacterial artificial chromosome shuttle vectors for constructing environmental libraries and detecting heterologous natural products in multiple expression hosts

30 September 2017

1 reference

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Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Estimating prokaryotic diversity and its limits

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Compilation of E. coli mRNA promoter sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Three-dimensional structure of beta-galactosidase from E. coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Studies on transformation of Escherichia coli with plasmids

30 September 2017

1 reference

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General transduction in Rhizobium meliloti

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

A complementation analysis of the restriction and modification of DNA in Escherichia coli

30 September 2017

1 reference

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DNA Restriction Enzyme from E. coli

30 September 2017

1 reference

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Improved tools for biological sequence comparison

30 September 2017

1 reference

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Culturing captures members of the soil rare biosphere

30 September 2017

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Broad-host-range expression vectors with tightly regulated promoters and their use to examine the influence of TraR and TraM expression on Ti plasmid quorum sensing

29 June 2018

1 reference

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beta-fructosidase superfamily: homology with some alpha-L-arabinases and beta-D-xylosidases

29 June 2018

1 reference

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Analysis of a 1600-kilobase Rhizobium meliloti megaplasmid using defined deletions generated in vivo

29 June 2018

1 reference

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Characterization of a glycoside hydrolase family 1 β-galactosidase from hot spring metagenome with transglycosylation activity

29 June 2018

1 reference

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The art and design of functional metagenomic screens.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

A plasmid RK2-based broad-host-range cloning vector useful for transfer of metagenomic libraries to a variety of bacterial species

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

A Sinorhizobium meliloti minE mutant has an altered morphology and exhibits defects in legume symbiosis.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Promoter prediction in the rhizobia.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5342196

Recent advances refining galactooligosaccharide production from lactose

22 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0172545

A Ca-alginate particle co-immobilized with Phanerochaete chrysosporium cells and the combined cross-linked enzyme aggregates from Trametes versicolor

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28273103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Versatile broad-host-range cosmids for construction of high quality metagenomic libraries

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28273103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/28273103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0172545

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

28273103

1 reference