Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis (Q36275655)

13 August 2017

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis (English)

1 reference

13 August 2017

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6 June 2020

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6 June 2020

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6 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26555056%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26555056%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Junko Okahara

1 reference

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6 June 2020

Patrick Lombard

1 reference

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6 June 2020

Rüdiger Behr

series ordinal

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6 June 2020

Erika Sasaki

series ordinal

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6 June 2020

language of work or name

English

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publication date

1 November 2015

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13 August 2017

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inferred from page(s)

published in

Developmental Cell

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6 June 2020

volume

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6 June 2020

issue

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6 June 2020

page(s)

366-382

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describes a project that uses

6 June 2020

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

cites work

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Mapping the route from naive pluripotency to lineage specification.

30 September 2017

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Resetting transcription factor control circuitry toward ground-state pluripotency in human

30 September 2017

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Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

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30 September 2017

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The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification

30 September 2017

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30 September 2017

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GATA6 levels modulate primitive endoderm cell fate choice and timing in the mouse blastocyst.

30 September 2017

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Birth of healthy offspring following ICSI in in vitro-matured common marmoset (Callithrix jacchus) oocytes

30 September 2017

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Validation of noise models for single-cell transcriptomics

30 September 2017

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Self-organizing properties of mouse pluripotent cells initiate morphogenesis upon implantation

30 September 2017

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Oct4 is required for lineage priming in the developing inner cell mass of the mouse blastocyst.

30 September 2017

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Common marmoset as a new model animal for neuroscience research and genome editing technology

30 September 2017

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Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

30 September 2017

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Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

30 September 2017

1 reference

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Treatment of human embryos with the TGFβ inhibitor SB431542 increases epiblast proliferation and permits successful human embryonic stem cell derivation

30 September 2017

1 reference

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Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.

30 September 2017

1 reference

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Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

30 September 2017

1 reference

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Porcn-dependent Wnt signaling is not required prior to mouse gastrulation

30 September 2017

1 reference

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Oct4 cell-autonomously promotes primitive endoderm development in the mouse blastocyst

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Naive pluripotency is associated with global DNA hypomethylation

30 September 2017

1 reference

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Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Pluripotency in the embryo and in culture

30 September 2017

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The transcriptional and epigenomic foundations of ground state pluripotency.

30 September 2017

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A unique regulatory phase of DNA methylation in the early mammalian embryo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

The roles of FGF and MAP kinase signaling in the segregation of the epiblast and hypoblast cell lineages in bovine and human embryos

30 September 2017

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Generation of chimeric rhesus monkeys

30 September 2017

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Human hypoblast formation is not dependent on FGF signalling.

30 September 2017

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Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells

30 September 2017

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Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal

30 September 2017

1 reference

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Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation.

30 September 2017

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The PluriNetWork: an electronic representation of the network underlying pluripotency in mouse, and its applications

30 September 2017

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Cytoscape 2.8: new features for data integration and network visualization

30 September 2017

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The primitive endoderm lineage of the mouse blastocyst: sequential transcription factor activation and regulation of differentiation by Sox17.

30 September 2017

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Differential expression analysis for sequence count data

30 September 2017

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Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

30 September 2017

1 reference

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Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

RNA-Seq analysis to capture the transcriptome landscape of a single cell

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

FGF signal-dependent segregation of primitive endoderm and epiblast in the mouse blastocyst

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Fast and SNP-tolerant detection of complex variants and splicing in short reads

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Suppression of Erk signalling promotes ground state pluripotency in the mouse embryo.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

A parallel circuit of LIF signalling pathways maintains pluripotency of mouse ES cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Novel STAT3 target genes exert distinct roles in the inhibition of mesoderm and endoderm differentiation in cooperation with Nanog.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Naive and primed pluripotent states

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

mRNA-Seq whole-transcriptome analysis of a single cell

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Germline competent embryonic stem cells derived from rat blastocysts

30 September 2017

1 reference

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Capture of authentic embryonic stem cells from rat blastocysts

30 September 2017

1 reference

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Distinct sequential cell behaviours direct primitive endoderm formation in the mouse blastocyst.

30 September 2017

1 reference

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The ground state of embryonic stem cell self-renewal

30 September 2017

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Tcf3 functions as a steady-state limiter of transcriptional programs of mouse embryonic stem cell self-renewal

30 September 2017

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Derivation of pluripotent epiblast stem cells from mammalian embryos

30 September 2017

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New cell lines from mouse epiblast share defining features with human embryonic stem cells

30 September 2017

1 reference

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Characterization of human embryonic stem cell lines by the International Stem Cell Initiative

30 September 2017

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Using GOstats to test gene lists for GO term association

30 September 2017

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Data fusion and multicue data matching by diffusion maps

30 September 2017

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Tight junctions and cell polarity.

30 September 2017

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An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

30 September 2017

1 reference

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Genetic regulation of stem cell origins in the mouse embryo.

30 September 2017

1 reference

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Evolutionary Divergence of Platelet-Derived Growth Factor Alpha Receptor Signaling Mechanisms

30 September 2017

1 reference

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Negative feedback loop of Wnt signaling through upregulation of conductin/axin2 in colorectal and liver tumors

30 September 2017

1 reference

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Claudin-6: a novel tight junction molecule is developmentally regulated in mouse embryonic epithelium

30 September 2017

1 reference

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Physiological rationale for responsiveness of mouse embryonic stem cells to gp130 cytokines.

30 September 2017

1 reference

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30 September 2017

1 reference

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Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Embryonic stem cell lines derived from human blastocysts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Targeted disruption of fibroblast growth factor (FGF) receptor 2 suggests a role for FGF signaling in pregastrulation mammalian development

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

The origin and efficient derivation of embryonic stem cells in the mouse

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Embryonic diapause in vertebrates

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Oct-4 transcription factor is differentially expressed in the mouse embryo during establishment of the first two extraembryonic cell lineages involved in implantation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Establishment in culture of pluripotential cells from mouse embryos

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

HPRT-deficient (Lesch-Nyhan) mouse embryos derived from germline colonization by cultured cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Immunosurgery of mouse blastocyst

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Time of commitment of inside cells isolated from preimplantation mouse embryos

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Generation of naive induced pluripotent stem cells from rhesus monkey fibroblasts.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Accounting for technical noise in single-cell RNA-seq experiments.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Oct4 and LIF/Stat3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal.

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Pluripotent cell lines derived from common marmoset (Callithrix jacchus) blastocysts

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Nonsurgical uterine stage preimplantation embryo collection from the common marmoset

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Potential of isolated mouse inner cell masses to form trophectoderm derivatives in vivo

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Defining an essential transcription factor program for naïve pluripotency

29 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Minimally invasive transabdominal collection of preimplantation embryos from the common marmoset monkey (Callithrix jacchus).

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

A Precarious Balance: Pluripotency Factors as Lineage Specifiers

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Dynamic expression of Lrp2 pathway members reveals progressive epithelial differentiation of primitive endoderm in mouse blastocyst.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

FGF stimulation of the Erk1/2 signalling cascade triggers transition of pluripotent embryonic stem cells from self-renewal to lineage commitment

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Wnt signaling is a key mediator of Cdx1 expression in vivo.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Embryonic stem cell lines of nonhuman primates.

22 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4643313

Early lineage segregation between epiblast and primitive endoderm in mouse blastocysts through the Grb2-MAPK pathway

22 September 2018

1 reference

12 December 2020

SnapShot: The epithelial-mesenchymal transition

1 reference

12 December 2020

A study of delayed implantation caused by parabiosis in pregnant rats

1 reference

12 December 2020

Frequency and extent of delayed implantation in lactating rats and mice

1 reference

12 December 2020

Survival of blastocysts in the uteri of ovariectomized mice

1 reference

12 December 2020

Heterogeneous differentiation of external cells in individual isolated early mouse inner cell masses in culture

1 reference

12 December 2020

Occludin and the functions of tight junctions

1 reference

12 December 2020

10.1016/J.DEVCEL.2015.10.011

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26555056%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26555056%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

26555056

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26555056%20AND%20SRC:MED&resulttype=core&format=json