A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex (Q36017119)

11 August 2017

A proton-coupled dynamic conformational switch in the HIV-1 dimerization initiation site kissing complex (English)

1 reference

11 August 2017

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Mihaela-Rita Mihailescu

series ordinal

1 reference

11 August 2017

John P Marino

series ordinal

1 reference

11 August 2017

language of work or name

English

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publication date

20 January 2004

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Proceedings of the National Academy of Sciences of the United States of America

11 August 2017

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11 August 2017

101

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11 August 2017

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11 August 2017

1189-1194

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Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1.

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Convergence of natural and artificial evolution on an RNA loop-loop interaction: the HIV-1 dimerization initiation site

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Impact of human immunodeficiency virus type 1 RNA dimerization on viral infectivity and of stem-loop B on RNA dimerization and reverse transcription and dissociation of dimerization from packaging

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

The crystal structure of the dimerization initiation site of genomic HIV-1 RNA reveals an extended duplex with two adenine bulges

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Dimer initiation sequence of HIV-1Lai genomic RNA: NMR solution structure of the extended duplex

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Structure of the dimer initiation complex of HIV-1 genomic RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Mutations in the kissing-loop hairpin of human immunodeficiency virus type 1 reduce viral infectivity as well as genomic RNA packaging and dimerization

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

A dual role of the putative RNA dimerization initiation site of human immunodeficiency virus type 1 in genomic RNA packaging and proviral DNA synthesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Dimerization of retroviral genomic RNAs: structural and functional implications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Role of the DIS hairpin in replication of human immunodeficiency virus type 1

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

HIV-1 nucleocapsid protein induces "maturation" of dimeric retroviral RNA in vitro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Maturation of dimeric viral RNA of Moloney murine leukemia virus.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Synthesis of small RNAs using T7 RNA polymerase

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Structure and dimerization of HIV-1 kissing loop aptamers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Effects of Mg2+, K+, and H+ on an equilibrium between alternative conformations of an RNA pseudoknot

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

Solution structure of loop A from the hairpin ribozyme from tobacco ringspot virus satellite

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=337028

A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

The HIV-1(Lai) RNA dimerization. Thermodynamic parameters associated with the transition from the kissing complex to the extended dimer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

Two basic regions of NCp7 are sufficient for conformational conversion of HIV-1 dimerization initiation site from kissing-loop dimer to extended-duplex dimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

Adenine protonation in domain B of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

Kissing-loop model of HIV-1 genome dimerization: HIV-1 RNAs can assume alternative dimeric forms, and all sequences upstream or downstream of hairpin 248-271 are dispensable for dimer formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

Mechanisms of Inhibition ofin VitroDimerization of HIV Type I RNA by Sense and Antisense Oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

NCp7 activates HIV-1Lai RNA dimerization by converting a transient loop-loop complex into a stable dimer

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0307966100

21 January 2018

Identifiers

DOI

10.1073/PNAS.0307966100

1 reference

release_d3awxedpm5df5artharieidn7q

11 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/d3awxedpm5df5artharieidn7q

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

11 August 2017

PubMed publication ID

14734802

1 reference