Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats (Q36003694)

11 August 2017

Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats. (English)

1 reference

11 August 2017

Klaus Schulten

1 reference

11 August 2017

Piotr E Marszalek

1 reference

11 August 2017

Johan Strümpfer

1 reference

11 August 2017

Whasil Lee

1 reference

11 August 2017

Vann Bennett

series ordinal

1 reference

11 August 2017

language of work or name

English

0 references

publication date

18 April 2012

1 reference

Journal of Biological Chemistry

11 August 2017

1 reference

inferred from page(s)

published in

1 reference

11 August 2017

287

1 reference

11 August 2017

1 reference

11 August 2017

19115-19121

1 reference

All-atom empirical potential for molecular modeling and dynamics studies of proteins

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Full Reconstruction of a Vectorial Protein Folding Pathway by Atomic Force Microscopy and Molecular Dynamics Simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Fast and forceful refolding of stretched alpha-helical solenoid proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Designed biomaterials to mimic the mechanical properties of muscles.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Contributions of conserved TPLH tetrapeptides to the conformational stability of ankyrin repeat proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Mechanical unfolding of an ankyrin repeat protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Force and function: probing proteins with AFM-based force spectroscopy.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

A theoretical model for the mechanical unfolding of repeat proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Ligand-dependent equilibrium fluctuations of single calmodulin molecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Folding and unfolding mechanism of highly stable full-consensus ankyrin repeat proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Stabilizing ionic interactions in a full-consensus ankyrin repeat protein

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Organizing the fluid membrane bilayer: diseases linked to spectrin and ankyrin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Single-molecule experiments in vitro and in silico

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Forced unfolding of coiled-coils in fibrinogen by single-molecule AFM.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Spectrin domains lose cooperativity in forced unfolding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Scalable molecular dynamics with NAMD

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Exploring the energy landscape of GFP by single-molecule mechanical experiments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Hereditary spherocytosis--defects in proteins that connect the membrane skeleton to the lipid bilayer

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Structure and functional significance of mechanically unfolded fibronectin type III1 intermediates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Designing repeat proteins: well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Crystal structure of a 12 ANK repeat stack from human ankyrinR.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Versatile cloning system for construction of multimeric proteins for use in atomic force microscopy.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Simulated refolding of stretched titin immunoglobulin domains

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Spectrin and ankyrin-based pathways: metazoan inventions for integrating cells into tissues

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

VMD: visual molecular dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

Forced unfolding of proteins within cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365944

The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family

11 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Nanospring behaviour of ankyrin repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Characterization and further stabilization of designed ankyrin repeat proteins by combining molecular dynamics simulations and experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

The molecular elasticity of the extracellular matrix protein tenascin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Mechanical unfolding pathways of the enhanced yellow fluorescent protein revealed by single molecule force spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Reverse engineering of the giant muscle protein titin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Hidden complexity in the mechanical properties of titin

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

Polysaccharide elasticity governed by chair–boat transitions of the glucopyranose ring

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.365569

In search of the hair-cell gating spring elastic properties of ankyrin and cadherin repeats

21 January 2018

1 reference

12 December 2020

Hematologically important mutations: ankyrin variants in hereditary spherocytosis

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Measuring Protein Mechanics by Atomic Force Microscopy: Figure 1

1 reference

12 December 2020

Cellular and membrane properties of alpha and beta thalassemic erythrocytes are different: implication for differences in clinical manifestations

1 reference

12 December 2020

Mechanical Unfolding of a Titin Ig Domain: Structure of Transition State Revealed by Combining Atomic Force Microscopy, Protein Engineering and Molecular Dynamics Simulations

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M112.365569

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

22514283

1 reference