Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays. (Q35922300)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26195730%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

title

Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays (English)

1 reference

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19 February 2020

1 reference

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19 February 2020

1 reference

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19 February 2020

1 reference

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19 February 2020

1 reference

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19 February 2020

Sarieh Ghorbani

1 reference

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19 February 2020

Ana Fernandez

series ordinal

1 reference

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19 February 2020

Maria Fransiska Njo

series ordinal

1 reference

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19 February 2020

Pierre Hilson

series ordinal

1 reference

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19 February 2020

publication date

20 July 2015

1 reference

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full work available at URL

19 February 2020

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526923

0 references

published in

Journal of Experimental Botany

1 reference

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19 February 2020

volume

1 reference

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19 February 2020

issue

1 reference

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19 February 2020

page(s)

5257-5269

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26195730%20AND%20SRC:MED&resulttype=core&format=json

The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.

19 February 2020

cites work

1 reference

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Polypeptide signaling molecules in plant development

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The secreted peptide PIP1 amplifies immunity through receptor-like kinase 7

2 October 2017

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Branching out in roots: uncovering form, function, and regulation

2 October 2017

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2 October 2017

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

2 October 2017

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Regulation of Arabidopsis root development by small signaling peptides

2 October 2017

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Characterization of the early events leading to totipotency in an Arabidopsis protoplast liquid culture by temporal transcript profiling

2 October 2017

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Floral organ abscission peptide IDA and its HAE/HSL2 receptors control cell separation during lateral root emergence.

2 October 2017

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Transcriptional and functional classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-like signaling peptides reveals their role in lateral root and hair formation

2 October 2017

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Small open reading frames associated with morphogenesis are hidden in plant genomes

2 October 2017

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Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth

2 October 2017

1 reference

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Chemical synthesis of Arabidopsis CLV3 glycopeptide reveals the impact of hydroxyproline arabinosylation on peptide conformation and activity.

2 October 2017

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CLE signaling systems during plant development and nematode infection

2 October 2017

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Small signaling peptides in Arabidopsis development: how cells communicate over a short distance

2 October 2017

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A role for the root cap in root branching revealed by the non-auxin probe naxillin

2 October 2017

1 reference

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In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis

2 October 2017

1 reference

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GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses

2 October 2017

1 reference

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CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity

2 October 2017

1 reference

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Oscillating gene expression determines competence for periodic Arabidopsis root branching

2 October 2017

1 reference

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Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis

2 October 2017

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VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets

2 October 2017

1 reference

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

2 October 2017

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Identification of tyrosylprotein sulfotransferase in Arabidopsis.

2 October 2017

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A signaling module controlling the stem cell niche in Arabidopsis root meristems

2 October 2017

1 reference

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Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.

2 October 2017

1 reference

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Profile Comparer: a program for scoring and aligning profile hidden Markov models

2 October 2017

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Hormone interactions at the root apical meristem.

2 October 2017

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Bioinformatic analysis of the CLE signaling peptide family

2 October 2017

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The Rice Annotation Project Database (RAP-DB): 2008 update

2 October 2017

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Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis.

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

2 October 2017

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Locating proteins in the cell using TargetP, SignalP and related tools

2 October 2017

1 reference

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GASA4, one of the 14-member Arabidopsis GASA family of small polypeptides, regulates flowering and seed development

2 October 2017

1 reference

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The TIGR Rice Genome Annotation Resource: improvements and new features

2 October 2017

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The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

2 October 2017

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The CLAVATA3/ESR motif of CLAVATA3 is functionally independent from the nonconserved flanking sequences

2 October 2017

1 reference

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

2 October 2017

1 reference

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Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis

2 October 2017

1 reference

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

2 October 2017

1 reference

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Improved prediction of signal peptides: SignalP 3.0

2 October 2017

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

2 October 2017

1 reference

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TM4: a free, open-source system for microarray data management and analysis

2 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Auxin-mediated cell cycle activation during early lateral root initiation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

An efficient algorithm for large-scale detection of protein families

2 October 2017

1 reference

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Glycopeptide synthesis and the effects of glycosylation on protein structure and activity.

2 October 2017

1 reference

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Flexible sequence similarity searching with the FASTA3 program package

2 October 2017

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Organization and cell differentiation in lateral roots of Arabidopsis thaliana

2 October 2017

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Callose deposition and symplastic connectivity are regulated prior to lateral root emergence

2 October 2017

1 reference

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Substantial expression of novel small open reading frames in Oryza sativa

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics.

11 July 2018

1 reference

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CEP genes regulate root and shoot development in response to environmental cues and are specific to seed plants.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development

24 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

ERF115 controls root quiescent center cell division and stem cell replenishment

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Symplastic intercellular connectivity regulates lateral root patterning

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Regulation and processing of a plant peptide hormone, AtRALF23, in Arabidopsis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Plant peptides in signalling: looking for new partners

24 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Identification of a biologically active, small, secreted peptide in Arabidopsis by in silico gene screening, followed by LC-MS-based structure analysis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

A high-resolution root spatiotemporal map reveals dominant expression patterns.

24 September 2018

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Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

Visualizing profile-profile alignment: pairwise HMM logos

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4526923

TM4 microarray software suite

24 September 2018

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Crossref

https://api.crossref.org/works/10.1093%2FJXB%2FERV346

Bioinformatic identification of plant peptides

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26195730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/JXB/ERV346

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26195730%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26195730%20AND%20SRC:MED&resulttype=core&format=json

19 February 2020

PubMed publication ID

26195730

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26195730%20AND%20SRC:MED&resulttype=core&format=json