Local structure formation in simulations of two small proteins (Q35910677)

11 August 2017

Local structure formation in simulations of two small proteins (English)

1 reference

11 August 2017

Vijay S Pande

1 reference

11 August 2017

Angel E García

1 reference

11 August 2017

Guha Jayachandran

1 reference

PMC publication ID

1931413

11 August 2017

V Vishal

series ordinal

1 reference

11 August 2017

11 October 2006

1 reference

Journal of Structural Biology

11 August 2017

1 reference

11 August 2017

157

1 reference

11 August 2017

1 reference

11 August 2017

491-499

1 reference

COMPUTING: Screen Savers of the World Unite!

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

GROMACS: fast, flexible, and free

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Simulations of the role of water in the protein-folding mechanism

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Testing protein-folding simulations by experiment: B domain of protein A.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Probing the folding and unfolding dynamics of secondary and tertiary structures in a three-helix bundle protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Solvent viscosity dependence of the folding rate of a small protein: distributed computing study

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Native-like mean structure in the unfolded ensemble of small proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Exploring the folding free energy surface of a three-helix bundle protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Absence of a stable intermediate on the folding pathway of protein A.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

NMR structure of the 35-residue villin headpiece subdomain

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Protein folding dynamics: the diffusion-collision model and experimental data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

PCP: a program for supervised classification of gene expression profiles.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Peptide models provide evidence for significant structure in the denatured state of a rapidly folding protein: the villin headpiece subdomain

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Application of the diffusion-collision model to the folding of three-helix bundle proteins

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Preorganized secondary structure as an important determinant of fast protein folding

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Folding simulations and computer redesign of protein A three-helix bundle motifs

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen

6 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1931413

A thermostable 35-residue subdomain within villin headpiece

6 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17098444

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17098444

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2006.10.001

1 reference

11 August 2017

1 reference

PMC publication ID

1931413

11 August 2017

PubMed publication ID

17098444

1 reference

PMC publication ID

1931413