The export factor Yra1 modulates mRNA 3' end processing. (Q35838270)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21947206%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

The export factor Yra1 modulates mRNA 3' end processing (English)

1 reference

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13 February 2020

1 reference

RNA-binding protein YRA1 YDR381W

1 reference

ATP-dependent RNA helicase SUB2 YDL084W

1 reference

Cleavage polyadenylation factor subunit CLP1 YOR250C

1 reference

1 reference

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13 February 2020

Sara A Johnson

1 reference

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13 February 2020

Hyunmin Kim

series ordinal

1 reference

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13 February 2020

Benjamin Erickson

series ordinal

1 reference

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13 February 2020

publication date

25 September 2011

1 reference

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Nature Structural & Molecular Biology

13 February 2020

published in

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13 February 2020

volume

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13 February 2020

issue

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13 February 2020

page(s)

1164-1171

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Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation

13 February 2020

cites work

1 reference

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

27 July 2018

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Gene-specific RNA polymerase II phosphorylation and the CTD code

27 July 2018

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Ubiquitin-mediated mRNP dynamics and surveillance prior to budding yeast mRNA export

27 July 2018

1 reference

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Novel protein-protein contacts facilitate mRNA 3'-processing signal recognition by Rna15 and Hrp1

27 July 2018

1 reference

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Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

27 July 2018

1 reference

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Reprogramming of 3' untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types

27 July 2018

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"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

27 July 2018

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Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

27 July 2018

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Bidirectional promoters generate pervasive transcription in yeast

27 July 2018

1 reference

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Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11.

27 July 2018

1 reference

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Polyadenylation linked to transcription termination directs the processing of snoRNA precursors in yeast

27 July 2018

1 reference

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Biogenesis of mRNPs: integrating different processes in the eukaryotic nucleus

27 July 2018

1 reference

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Protein factors in pre-mRNA 3'-end processing.

27 July 2018

1 reference

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ATP-dependent recruitment of export factor Aly/REF onto intronless mRNAs by RNA helicase UAP56

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI.

27 July 2018

1 reference

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Overlapping pathways dictate termination of RNA polymerase II transcription.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Alternative 3' pre-mRNA processing in Saccharomyces cerevisiae is modulated by Nab4/Hrp1 in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Phosphorylation and functions of the RNA polymerase II CTD

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Transitions in RNA polymerase II elongation complexes at the 3' ends of genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Stable mRNP formation and export require cotranscriptional recruitment of the mRNA export factors Yra1p and Sub2p by Hpr1p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Intron status and 3'-end formation control cotranscriptional export of mRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Expression of the essential mRNA export factor Yra1p is autoregulated by a splicing-dependent mechanism

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Coupling of termination, 3' processing, and mRNA export

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Rna15 interaction with the A-rich yeast polyadenylation signal is an essential step in mRNA 3'-end formation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Messenger RNAs are recruited for nuclear export during transcription

27 July 2018

1 reference

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Assembly and transport of a premessenger RNP particle

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Control of cleavage site selection during mRNA 3' end formation by a yeast hnRNP.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3′-end formation in yeast

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

ALY, a context-dependent coactivator of LEF-1 and AML-1, is required for TCRalpha enhancer function

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

3'-end-forming signals of yeast mRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

The polyadenylation factor CstF-64 regulates alternative processing of IgM heavy chain pre-mRNA during B cell differentiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Role of polyadenylation in nucleocytoplasmic transport of mRNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Mature mRNA 3' end formation stimulates RNA export from the nucleus.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Uniform transitions of the general RNA polymerase II transcription complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

The landscape of C. elegans 3'UTRs

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Nuclear mRNA surveillance in THO/sub2 mutants is triggered by inefficient polyadenylation

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Quality control of mRNP in the nucleus

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Regulation of mRNP dynamics along the export pathway

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Exporting RNA from the nucleus to the cytoplasm

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Drosophila Sex-lethal protein mediates polyadenylation switching in the female germline

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

HEL/UAP56 binds cotranscriptionally to the Balbiani ring pre-mRNA in an intron-independent manner and accompanies the BR mRNP to the nuclear pore.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

hnRNP F influences binding of a 64-kilodalton subunit of cleavage stimulation factor to mRNA precursors in mouse B cells

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

A human nuclear-localized chaperone that regulates dimerization, DNA binding, and transcriptional activity of bZIP proteins

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Effects of mutations in the Saccharomyces cerevisiae RNA14 gene on the abundance and polyadenylation of its transcripts

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Effects of mutations in the Saccharomyces cerevisiae RNA14, RNA15, and PAP1 genes on polyadenylation in vivo

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3307051

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2126

Assembly of export-competent mRNP: it's all about being connected

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2126

31 March 2020

Identifiers

DOI

10.1038/NSMB.2126

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21947206%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21947206%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

21947206

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21947206%20AND%20SRC:MED&resulttype=core&format=json