Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution (Q35808767)

10 August 2017

Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution (English)

1 reference

10 August 2017

Billy K Poon

1 reference

10 August 2017

Xiaorui Chen

1 reference

10 August 2017

Mingyang Lu

1 reference

10 August 2017

Nand K Vyas

1 reference

10 August 2017

Florante A Quiocho

1 reference

10 August 2017

Qinghua Wang

1 reference

10 August 2017

Jianpeng Ma

1 reference

10 August 2017

language of work or name

English

0 references

publication date

30 April 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

1 reference

10 August 2017

104

1 reference

10 August 2017

1 reference

10 August 2017

7869-7874

1 reference

A New Method for Coarse-Grained Elastic Normal-Mode Analysis

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Protein structural variation in computational models and crystallographic data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Refinement of macromolecular structures by the maximum-likelihood method

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

The CCP4 suite: programs for protein crystallography

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

New advances in normal mode analysis of supermolecular complexes and applications to structural refinement

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Nonlinear temperature dependence of the crystal structure of lysozyme: correlation between coordinate shifts and thermal factors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

A novel type of regulation of the vimentin intermediate filament cytoskeleton by a Golgi protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Dynamics of proteins in crystals: comparison of experiment with simple models

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Anisotropy of fluctuation dynamics of proteins with an elastic network model

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

The crystal structure of the formiminotransferase domain of formiminotransferase-cyclodeaminase: implications for substrate channeling in a bifunctional enzyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Formiminotransferase cyclodeaminase is an organ-specific autoantigen recognized by sera of patients with autoimmune hepatitis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Molecular cloning, characterization, and dynamics of rat formiminotransferase cyclodeaminase, a Golgi-associated 58-kDa protein

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

58K, a microtubule-binding Golgi protein, is a formiminotransferase cyclodeaminase

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

The allosteric mechanism of the chaperonin GroEL: a dynamic analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Structural mechanisms for domain movements in proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Dynamic structure of human lysozyme derived from X-ray crystallography: normal mode refinement

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

The Two Monofunctional Domains of Octameric Formiminotransferase-Cyclodeaminase Exist as Dimers

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Refinement of protein dynamic structure: normal mode refinement

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Improved methods for building protein models in electron density maps and the location of errors in these models

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Rigid protein motion as a model for crystallographic temperature factors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Normal mode refinement: crystallographic refinement of protein dynamic structure applied to human lysozyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Normal mode refinement: crystallographic refinement of protein dynamic structure. II. Application to human lysozyme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

Normal mode refinement: crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1876539

On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

On the potential of normal-mode analysis for solving difficult molecular-replacement problems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

TLSANL: TLS parameter-analysis program for segmented anisotropic refinement of macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701204104

Why protein R-factors are so large: a self-consistent analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17470791

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0701204104

1 reference

10 August 2017

0 references

1 reference

10 August 2017

PubMed publication ID

17470791

1 reference