Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli (Q35759566)

10 August 2017

title

Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli (English)

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10 August 2017

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Mikhail Bubunenko

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10 August 2017

Teresa Baker

series ordinal

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10 August 2017

Donald L Court

series ordinal

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10 August 2017

language of work or name

English

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publication date

2 February 2007

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10 August 2017

published in

Journal of Bacteriology

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10 August 2017

volume

189

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10 August 2017

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10 August 2017

page(s)

2844-2853

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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

10 August 2017

cites work

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30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15.

2 October 2017

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Essential genes of a minimal bacterium

2 October 2017

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Ribosome binding proteins YhbH and YfiA have opposite functions during 100S formation in the stationary phase of Escherichia coli

2 October 2017

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Ribosomal proteins in the spotlight

2 October 2017

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Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation

2 October 2017

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The social life of ribosomal proteins

2 October 2017

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Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains

2 October 2017

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Creating ribosomes with an all-RNA 30S subunit P site

2 October 2017

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In vivo effect of NusB and NusG on rRNA transcription antitermination

2 October 2017

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Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

2 October 2017

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A novel stress-response protein that binds at the ribosomal subunit interface and arrests translation

2 October 2017

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A spring-loaded state of NusG in its functional cycle is suggested by X-ray crystallography and supported by site-directed mutants

2 October 2017

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Genetic engineering using homologous recombination

2 October 2017

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Rho-dependent termination and ATPases in transcript termination

2 October 2017

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Requirement for NusG for transcription antitermination in vivo by the lambda N protein

2 October 2017

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Ribosome structure and the mechanism of translation

2 October 2017

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Microbial minimalism: genome reduction in bacterial pathogens

2 October 2017

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How many genes can make a cell: the minimal-gene-set concept

2 October 2017

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Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

2 October 2017

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High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides

2 October 2017

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Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase

2 October 2017

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rho is not essential for viability or virulence in Staphylococcus aureus

2 October 2017

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Transposon-based approaches to identify essential bacterial genes

2 October 2017

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Exoribonucleases and their multiple roles in RNA metabolism

2 October 2017

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Proteins shared by the transcription and translation machines

2 October 2017

1 reference

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The search for essential genes

2 October 2017

1 reference

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An efficient recombination system for chromosome engineering in Escherichia coli

2 October 2017

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An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria

2 October 2017

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Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction.

2 October 2017

1 reference

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A Genomic Perspective on Protein Families

2 October 2017

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Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization

2 October 2017

1 reference

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Transcription antitermination: the lambda paradigm updated

2 October 2017

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Chromosomal duplications in bacteria, fruit flies, and humans

2 October 2017

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RNA and protein elements of E. coli and lambda transcription antitermination complexes

2 October 2017

1 reference

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Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control

2 October 2017

1 reference

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Ribosomal RNA antitermination in vitro: requirement for Nus factors and one or more unidentified cellular components.

2 October 2017

1 reference

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Identification of a putative Bacillus subtilis rho gene

2 October 2017

1 reference

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Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

ssaD1, a suppressor of secA51(Ts) that renders growth of Escherichia coli cold sensitive, is an early amber mutation in the transcription factor gene nusB

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

RNA processing in prokaryotic cells

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Ribosome modulation factor: stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Functional analysis of the ffh-trmD region of the Escherichia coli chromosome by using reverse genetics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Inversions between ribosomal RNA genes of Escherichia coli

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Assembly of bacterial ribosomes

2 October 2017

1 reference

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A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Genetic analysis of the rnc operon of Escherichia coli

2 October 2017

1 reference

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Analysis of the Escherichia coli nusA10(Cs) allele: relating nucleotide changes to phenotypes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Isolation and characterization of conditional lethal mutants of Escherichia coli defective in transcription termination factor rho

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Growth phase coupled modulation of Escherichia coli ribosomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

NusA is required for ribosomal antitermination and for modulation of the transcription elongation rate of both antiterminated RNA and mRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20

27 July 2018

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Mutants lacking individual ribosomal proteins as a tool to investigate ribosomal properties

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Requirement for E. coli NusG protein in factor-dependent transcription termination

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

A set of recombineering plasmids for gram-negative bacteria

27 July 2018

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The ribosome-associated inhibitor A reduces translation errors

25 September 2018

1 reference

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Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation

25 September 2018

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Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Ribosomal protein S1 is required for translation of most, if not all, natural mRNAs in Escherichia coli in vivo

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Recognition of boxA antiterminator RNA by the E. coli antitermination factors NusB and ribosomal protein S10

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Insertional disruption of the nusB (ssyB) gene leads to cold-sensitive growth of Escherichia coli and suppression of the secY24 mutation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855809

Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription

25 September 2018

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12 December 2020

Cell cycle arrest in Era GTPase mutants: a potential growth rate-regulated checkpoint in Escherichia coli

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12 December 2020

Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli

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12 December 2020

Antiterminator-dependent modulation of transcription elongation rates by NusB and NusG

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12 December 2020

Assembly of the 30S ribosomal subunit

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12 December 2020

Conditionally lethal nusAts mutation of Escherichia coli reduces transcription termination but does not affect antitermination of bacteriophage lambda

1 reference

12 December 2020

Ribosomal RNA operon anti-termination. Function of leader and spacer region box B-box A sequences and their conservation in diverse micro-organisms

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12 December 2020

Identifiers

DOI

10.1128/JB.01713-06

1 reference

10 August 2017

1 reference

10 August 2017

1 reference