Light signaling controls nuclear architecture reorganization during seedling establishment. (Q35669395)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25964332%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Light signaling controls nuclear architecture reorganization during seedling establishment (English)

1 reference

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7 March 2020

1 reference

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7 March 2020

1 reference

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7 March 2020

1 reference

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7 March 2020

1 reference

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7 March 2020

1 reference

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7 March 2020

Gerald Zabulon

1 reference

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7 March 2020

Fabio Formiggini

1 reference

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7 March 2020

Maria A Koini

1 reference

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7 March 2020

Spencer C Brown

1 reference

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7 March 2020

Paul Fransz

1 reference

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7 March 2020

language of work or name

English

0 references

publication date

11 May 2015

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

7 March 2020

published in

1 reference

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7 March 2020

volume

112

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7 March 2020

issue

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7 March 2020

page(s)

E2836-44

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describes a project that uses

7 March 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4450433/fullTextXML

inferred from PubMed Central ID database lookup

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Dedifferentiation of Arabidopsis thaliana cells is accompanied by a strong decrease in RNA polymerase II transcription activity and poly(A+) RNA and 25S rRNA eradication from the cytoplasm

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Nuclear organization changes and the epigenetic silencing of FLC during vernalization

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The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis

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Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana.

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The impact of chromatin dynamics on plant light responses and circadian clock function

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Extensive natural epigenetic variation at a de novo originated gene

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The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

12 July 2018

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Genome architecture: domain organization of interphase chromosomes

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Heterochromatin dynamics during developmental transitions in Arabidopsis - a focus on ribosomal DNA loci

12 July 2018

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Photoreceptor signaling networks in plant responses to shade

12 July 2018

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Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

12 July 2018

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Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis

12 July 2018

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MORC family ATPases required for heterochromatin condensation and gene silencing.

12 July 2018

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Shedding light on large-scale chromatin reorganization in Arabidopsis thaliana

12 July 2018

1 reference

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Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation.

12 July 2018

1 reference

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Histone modifications in transcriptional activation during plant development

12 July 2018

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From nucleosome to chromosome: a dynamic organization of genetic information

12 July 2018

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The epigenome and plant development

12 July 2018

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Organization and dynamics of plant interphase chromosomes.

12 July 2018

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Germline specification and function in plants.

12 July 2018

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Epigenetic regulation and reprogramming during gamete formation in plants

12 July 2018

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Stress-induced activation of heterochromatic transcription.

12 July 2018

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Epigenetic reprogramming in plant and animal development

12 July 2018

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Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis

12 July 2018

1 reference

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Light-regulated plant growth and development

12 July 2018

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

12 July 2018

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Senescing cells share common features with dedifferentiating cells.

12 July 2018

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12 July 2018

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Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine.

12 July 2018

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Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.

12 July 2018

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Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis.

12 July 2018

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Chromatin rearrangements in development

12 July 2018

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Light-regulated transcriptional networks in higher plants

12 July 2018

1 reference

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Light signal transduction in higher plants

12 July 2018

1 reference

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Mouse centric and pericentric satellite repeats form distinct functional heterochromatin

12 July 2018

1 reference

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Cytogenetics as a tool to study gene regulation

12 July 2018

1 reference

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Heterochromatin in interphase nuclei of Arabidopsis thaliana

12 July 2018

1 reference

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Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development

12 July 2018

1 reference

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DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

12 July 2018

1 reference

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Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Antagonistic actions of Arabidopsis cryptochromes and phytochrome B in the regulation of floral induction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

TheArabidopsis HY5gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Mutational analyses of light-controlled seedling development in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

RNA polymerase II forms transcription networks in rye and Arabidopsis nuclei and its amount increases with endopolyploidy.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Patterns of population epigenomic diversity.

25 September 2018

1 reference

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Evidence for karyoplasmic homeostasis during endoreduplication and a ploidy-dependent increase in gene transcription during tomato fruit growth.

25 September 2018

1 reference

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DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Genome-Wide Analysis of Light-Dependent Transcript Accumulation Patterns during Early Stages of Arabidopsis Seedling Deetiolation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Interplay of RNA Pol IV and ROS1 During Post-Embryonic 5S rDNA Chromatin Remodeling

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Histone modifications and expression of light-regulated genes in Arabidopsis are cooperatively influenced by changing light conditions

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Large-scale dissociation and sequential reassembly of pericentric heterochromatin in dedifferentiated Arabidopsis cells.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Nuclear DNA content and nuclear and cell volume are positively correlated in angiosperms.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Organ-specific expression of Arabidopsis genome during development.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Changes in 5S rDNA chromatin organization and transcription during heterochromatin establishment in Arabidopsis

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

The architecture of interphase chromosomes and gene positioning are altered by changes in DNA methylation and histone acetylation

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Disruption of the plant gene MOM releases transcriptional silencing of methylated genes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Technical advance: spatio-temporal analysis of mitotic activity with a labile cyclin-GUS fusion protein

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Phytochrome controls the number of endoreduplication cycles in the Arabidopsis thaliana hypocotyl

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Cellular basis of hypocotyl growth in Arabidopsis thaliana.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Regulatory hierarchy of photomorphogenic loci: allele-specific and light-dependent interaction between the HY5 and COP1 loci

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4450433

Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25964332

12 December 2020

inferred from PubMed ID database lookup

Two means of transcriptional reactivation within heterochromatin

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25964332

12 December 2020

inferred from PubMed ID database lookup

The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25964332

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.1503512112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25964332%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25964332%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

25964332

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25964332%20AND%20SRC:MED&resulttype=core&format=json