Pairagon+N-SCAN_EST: a model-based gene annotation pipeline (Q35664031)

From Wikidata

Jump to navigation Jump to search

scientific article published on 7 August 2006

edit

Language	Label	Description	Also known as
English	Pairagon+N-SCAN_EST: a model-based gene annotation pipeline	scientific article published on 7 August 2006

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

title

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

author

Manimozhiyan Arumugam

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

Chaochun Wei

object named as

Chaochun Wei

series ordinal

2

0 references

author name string

Randall H Brown

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

Michael R Brent

series ordinal

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

publication date

7 August 2006

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

published in

Genome Biology

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

volume

7 Suppl 1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

page(s)

S5.1-10

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

cites work

EGASP: the human ENCODE Genome Annotation Assessment Project

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Iterative gene prediction and pseudogene removal improves genome annotation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Genome annotation past, present, and future: how to define an ORF at each locus

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Improved spliced alignment from an information theoretic approach

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Begin at the beginning: predicting genes with 5' UTRs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

GeneWise and Genomewise

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Aligning multiple genomic sequences with the threaded blockset aligner

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Eval: a software package for analysis of genome annotations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

A computational scan for U12-dependent introns in the human genome sequence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Integrating genomic homology into gene structure prediction.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

The mammalian gene collection

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

12 July 2018

Using multiple alignments to improve gene prediction

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

25 September 2018

Comparative ab initio prediction of gene structures using pair HMMs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810554

retrieved

25 September 2018

Identifiers

DOI

10.1186/GB-2006-7-S1-S5

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

Dimensions Publication ID

1010895606

0 references

PMC publication ID

1810554

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

PubMed publication ID

16925839

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16925839

retrieved

9 August 2017

ResearchGate publication ID

6862109

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q35664031&oldid=2197593612"