Polycomb-repressed genes have permissive enhancers that initiate reprogramming (Q35619375)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22153073%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Polycomb-repressed genes have permissive enhancers that initiate reprogramming (English)

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18 January 2020

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18 January 2020

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18 January 2020

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18 January 2020

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18 January 2020

Theresa K Kelly

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18 January 2020

Chun-Chi Liu

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18 January 2020

Jueng Soo You

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18 January 2020

Tina B Miranda

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18 January 2020

Xianghong J Zhou

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18 January 2020

Peter A Jones

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18 January 2020

language of work or name

English

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publication date

1 December 2011

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18 January 2020

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18 January 2020

volume

147

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18 January 2020

issue

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18 January 2020

page(s)

1283-1294

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OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes

18 January 2020

cites work

1 reference

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Histone methylation by PRC2 is inhibited by active chromatin marks

12 July 2018

1 reference

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Mapping and analysis of chromatin state dynamics in nine human cell types

12 July 2018

1 reference

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A unique chromatin signature uncovers early developmental enhancers in humans

12 July 2018

1 reference

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

12 July 2018

1 reference

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ENCODE whole-genome data in the UCSC genome browser (2011 update)

12 July 2018

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H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes

12 July 2018

1 reference

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Mediator and cohesin connect gene expression and chromatin architecture

12 July 2018

1 reference

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A quantitative model of transcriptional regulation reveals the influence of binding location on expression

12 July 2018

1 reference

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Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer

12 July 2018

1 reference

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A CTCF-independent role for cohesin in tissue-specific transcription

12 July 2018

1 reference

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Genomic views of distant-acting enhancers

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Histone modifications at human enhancers reflect global cell-type-specific gene expression

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

H2AZ is enriched at polycomb complex target genes in ES cells and is necessary for lineage commitment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C).

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Combinatorial patterns of histone acetylations and methylations in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Directly reprogrammed fibroblasts show global epigenetic remodeling and widespread tissue contribution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Induction of pluripotent stem cells from adult human fibroblasts by defined factors

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

The landscape of histone modifications across 1% of the human genome in five human cell lines

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

High-resolution profiling of histone methylations in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

12 July 2018

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

12 July 2018

1 reference

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Chromatin signatures of pluripotent cell lines

12 July 2018

1 reference

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Differential dynamics of histone H3 methylation at positions K4 and K9 in the mouse zygote

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Capturing chromosome conformation

12 July 2018

1 reference

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Nuclear cloning and epigenetic reprogramming of the genome

12 July 2018

1 reference

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Use of a conditional MyoD transcription factor in studies of MyoD trans-activation and muscle determination

12 July 2018

1 reference

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The distal human myoD enhancer sequences direct unique muscle-specific patterns of lacZ expression during mouse development.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Control of myogenesis in the mouse myogenic C2 cell line by medium composition and by insulin: characterization of permissive and inducible C2 myoblasts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Complementation between two cell lines lacking kappa enhancer activity: implications for the developmental control of immunoglobulin transcription

12 July 2018

1 reference

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Rapid detection of octamer binding proteins with 'mini-extracts', prepared from a small number of cells

12 July 2018

1 reference

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Activation of muscle-specific genes in pigment, nerve, fat, liver, and fibroblast cell lines by forced expression of MyoD.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Transfection of a DNA locus that mediates the conversion of 10T1/2 fibroblasts to myoblasts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

3,5,3'-Triiodothyronine positively regulates both MyoD1 gene transcription and terminal differentiation in C2 myoblasts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Progressive stages of "transdifferentiation" from epidermal to mesenchymal phenotype induced by MyoD1 transfection, 5-aza-2'-deoxycytidine treatment, and selection for reduced cell attachment in the human keratinocyte line HaCaT

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

A novel myoblast enhancer element mediates MyoD transcription

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

The three 'C' s of chromosome conformation capture: controls, controls, controls.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Myogenic determination occurs independently in somites and limb buds.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

MyoD and Myf-5 differentially regulate the development of limb versus trunk skeletal muscle.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

Embryonic activation of the myoD gene is regulated by a highly conserved distal control element.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

The regulation of MyoD gene expression: conserved elements mediate expression in embryonic axial muscle.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240866

10.1016/J.CELL.2011.10.040

25 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22153073%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22153073%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

22153073

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22153073%20AND%20SRC:MED&resulttype=core&format=json