Changes in site specificity of single-strand-specific endonucleases on supercoiled PM2 DNA with temperature and ionic environment (Q35443116)

8 August 2017

title

Changes in site specificity of single-strand-specific endonucleases on supercoiled PM2 DNA with temperature and ionic environment (English)

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8 August 2017

D Kowalski

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8 August 2017

language of work or name

English

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publication date

1 September 1984

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8 August 2017

published in

Nucleic Acids Research

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8 August 2017

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8 August 2017

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8 August 2017

page(s)

7071-7086

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Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

8 August 2017

cites work

1 reference

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Formation of Z-DNA in negatively supercoiled plasmids is sensitive to small changes in salt concentration within the physiological range

27 July 2018

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Homocopolymer sequences in the spacer of a sea urchin histone gene repeat are sensitive to S1 nuclease

27 July 2018

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27 July 2018

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Hairpin-loop formation by inverted repeats in supercoiled DNA is a local and transmissible property

27 July 2018

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The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

27 July 2018

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Analysis of endonuclease R-EcoRI fragments of DNA from lambdoid bacteriophages and other viruses by agarose-gel electrophoresis

27 July 2018

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Cleavage of circular, superhelical simian virus 40 DNA to a linear duplex by S1 nuclease

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Superstructure of linear duplex DNA

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers

27 July 2018

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Site of cleavage of superhelical phiX174 replicative form DNA by the single strand-specific Neurospora crassa endonuclease

27 July 2018

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A map of the sites on bacteriophage PM2 DNA for the restriction endonucleases HindIII and HpaII

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

pBR322 restriction map derived from the DNA sequence: accurate DNA size markers up to 4361 nucleotide pairs long

27 July 2018

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Base-unpaired regions in supercoiled replicative form DNA of coliphage M13

27 July 2018

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Torsional stress and local denaturation in supercoiled DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

DNA Gyrase and DNA Supercoiling

27 July 2018

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A procedure for the quantitation of relaxed closed circular DNA in the presence of superhelical DNA: An improved fluorometric assay for nicking-closing enzyme

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Specific site of action for single-strand specific nuclease on the double-stranded circular DNA intermediates of an avian RNA tumor virus

27 July 2018

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Specific cleavages inflicted by venom phosphodiesterase on superhelical phiX174 DNA

27 July 2018

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Discrete fragmnets produced by limited digestion of superhelical PM2 DNA with venom phosphodiesterase. Cleavage sites and mode of generation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Structure and reactions of closed duplex DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

An endonuclease activity of venom phosphodiesterase specific for single-stranded and superhelical DNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Mapping of closed circular DNAs by cleavage with restriction endonucleases and calibration by agarose gel electrophoresis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Dye titrations of covalently closed supercoiled DNA analyzed by agarose gel electrophoresis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Random cleavage of superhelical SV40 DNA by S1 nuclease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Conformational fluctuations of DNA helix

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Specificity of the S1 nuclease from Aspergillus oryzae

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Mung bean nuclease I. 6. Physical, chemical, and catalytic properties

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=320143

Variation of the average rotation angle of the DNA helix and the superhelical turns of covalently closed cyclic lambda DNA

27 July 2018

1 reference

12 December 2020

Sedimentation velocity behavior of closed circular SV40 DNA as a function of superhelix density, ionic strength, counterion and temperature

1 reference

12 December 2020

Characterization of the single-strand-specific nuclease S1 activity on double-stranded supercoiled polyoma DNA

1 reference

12 December 2020

The relation of single-stranded regions in bacteriophage PM2 supercoiled DNA to the early melting sequences

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12 December 2020

Supercoiling in closed circular DNA: dependence upon ion type and concentration

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12 December 2020

35 Purification and properties of venom phosphodiesterase

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12 December 2020

DNA structure and gene regulation

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12 December 2020

Cruciform structures in supercoiled DNA

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12 December 2020

Theoretical analysis of competitive conformational transitions in torsionally stressed DNA

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12 December 2020

Action of mung bean nuclease on supercoiled PM2 DNA

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12 December 2020

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

1 reference

12 December 2020

An altered DNA conformation detected by S1 nuclease occurs at specific regions in active chick globin chromatin

1 reference

12 December 2020

Negatively supercoiled plasmids contain left-handed Z-DNA segments as detected by specific antibody binding

1 reference

12 December 2020

Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/12.18.7071

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8 August 2017

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8 August 2017

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