piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing (Q35076237)

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English	piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing	scientific article

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instance of

scholarly article

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stated in

Europe PubMed Central

PubMed publication ID

25342065

retrieved

6 August 2017

title

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

25342065

retrieved

6 August 2017

main subject

RNA analysis

1 reference

based on heuristic

inferred from title

RNA sequencing

1 reference

based on heuristic

inferred from title

Piwi-interacting RNA

1 reference

based on heuristic

inferred from title

RNA-Seq

1 reference

based on heuristic

inferred from title

DNA sequencing

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based on heuristic

inferred from title

author

Bo W Han

series ordinal

1

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stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

Phillip D. Zamore

series ordinal

3

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stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

author name string

Wei Wang

series ordinal

2

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stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

Zhiping Weng

series ordinal

4

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stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

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7 June 2020

language of work or name

English

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publication date

17 October 2014

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stated in

Europe PubMed Central

PubMed publication ID

25342065

retrieved

6 August 2017

published in

Bioinformatics

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stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

volume

31

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stated in

Europe PubMed Central

PMC publication ID

4325541

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

issue

4

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Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

page(s)

593-595

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Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

copyright license

Creative Commons Attribution-NonCommercial 4.0 International

start time

28 December 2016

1 reference

stated in

April 2023 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

HTSeq--a Python framework to work with high-throughput sequencing data

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PubMed Central

reference URL

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8 July 2018

RCircos: an R package for Circos 2D track plots.

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8 July 2018

PIWI-interacting RNAs: from generation to transgenerational epigenetics

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8 July 2018

RetroSeq: transposable element discovery from next-generation sequencing data

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8 July 2018

Differential analysis of gene regulation at transcript resolution with RNA-seq

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8 July 2018

Streaming fragment assignment for real-time analysis of sequencing experiments

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8 July 2018

Transcriptional silencing of transposons by Piwi and maelstrom and its impact on chromatin state and gene expression

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PubMed Central

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4325541

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8 July 2018

STAR: ultrafast universal RNA-seq aligner

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PubMed Central

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8 July 2018

Adaptation to P element transposon invasion in Drosophila melanogaster

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8 July 2018

Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing

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8 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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8 July 2018

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery

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8 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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8 July 2018

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

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8 July 2018

Model-based analysis of ChIP-Seq (MACS)

1 reference

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PubMed Central

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8 July 2018

Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

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8 July 2018

Identifiers

DOI

10.1093/BIOINFORMATICS/BTU647

1 reference

stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

DBLP publication ID

journals/bioinformatics/HanWZW15

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

4325541

1 reference

stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

PubMed publication ID

25342065

1 reference

stated in

Europe PubMed Central

PMC publication ID

4325541

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25342065%20AND%20SRC:MED&resulttype=core&format=json

retrieved

7 June 2020

ResearchGate publication ID

267731243

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