NMR studies of G:A mismatches in oligodeoxyribonucleotide duplexes modelled after ribozymes (Q35018929)

5 August 2017

title

NMR studies of G:A mismatches in oligodeoxyribonucleotide duplexes modelled after ribozymes (English)

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5 August 2017

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Katahira M

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5 August 2017

Sato H

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5 August 2017

Mishima K

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5 August 2017

Uesugi S

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5 August 2017

Fujii S

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5 August 2017

language of work or name

English

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publication date

1 November 1993

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

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5 August 2017

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5 August 2017

page(s)

5418-5424

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Sequence-dependent structural variations in two right-handed alternating pyrimidine-purine DNA oligomers in solution determined by nuclear Overhauser enhancement measurements

5 August 2017

cites work

1 reference

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Detection of a guanine X adenine base pair in a decadeoxyribonucleotide by proton magnetic resonance spectroscopy

8 July 2018

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Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins

8 July 2018

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Two-dimensional 1H NMR study of the lambda operator site OL1: a sequential assignment strategy and its application

8 July 2018

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A two-dimensional NMR study of the solution structure of a DNA dodecamer comprising the concensus sequence for the specific DNA-binding sites of the glucocorticoid receptor protein

8 July 2018

1 reference

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Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations

8 July 2018

1 reference

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One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract

8 July 2018

1 reference

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Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

8 July 2018

1 reference

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Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

8 July 2018

1 reference

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Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs

8 July 2018

1 reference

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The chemistry of self-splicing RNA and RNA enzymes

8 July 2018

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A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations

8 July 2018

1 reference

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Sequence-dependent structural variations of hammerhead RNA enzymes

8 July 2018

1 reference

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Mixed deoxyribo- and ribo-oligonucleotides with catalytic activity

8 July 2018

1 reference

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NMR and molecular modeling evidence for a G.A mismatch base pair in a purine-rich DNA duplex

8 July 2018

1 reference

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Function of specific 2'-hydroxyl groups of guanosines in a hammerhead ribozyme probed by 2' modifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Sequence requirements of the hammerhead RNA self-cleavage reaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Synthesis and NMR study of ribo-oligonucleotides forming a hammerhead-type RNA enzyme system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Minimal sequence requirements for ribozyme activity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Importance of specific purine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

A small metalloribozyme with a two-step mechanism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Chimeric DNA-RNA hammerhead ribozymes have enhanced in vitro catalytic efficiency and increased stability in vivo

8 July 2018

1 reference

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Proton nuclear magnetic resonance investigation of the conformation and dynamics in the synthetic deoxyribonucleic acid decamers d(ATATCGATAT) and d(ATATGCATAT).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=310580

Structural studies of the 5′-phenazinium-tethered matched and G-A-mismatched DNA duplexes by NMR spectroscopy

25 October 2018

1 reference

12 December 2020

Assignment of the non-exchangeable proton resonances of d(C-G-C-G-A-A-T-T-C-G-C-G) using two-dimensional nuclear magnetic resonance methods

1 reference

12 December 2020

A small catalytic oligoribonucleotide

1 reference

12 December 2020

Construction of a series of several self-cleaving RNA duplexes using synthetic 21-mers

1 reference

12 December 2020

Determination of the conformation of d(GGAAATTTCC)2 in solution by use of 1H NMR and restrained molecular dynamics

1 reference

12 December 2020

Thermodynamics of DNA duplexes with adjacent G.cntdot.A mismatches

1 reference

12 December 2020

Kinetic Characterization of Ribonuclease-Resistant 2′-Modified Hammerhead Ribozymes

1 reference

12 December 2020

Base pairing geometry in GA mismatches depends entirely on the neighboring sequence

1 reference

12 December 2020

Proton nuclear Overhauser effect study of the structure of a deoxyoligonucleotide duplex in aqueous solution

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/21.23.5418

1 reference

release_klq2mkcgljf7lirzruxkbvlvzi

5 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/klq2mkcgljf7lirzruxkbvlvzi

24 November 2022

mapped directly with Wikidata item

PMC publication ID

310580

1 reference

5 August 2017

1 reference