Role of polynucleotide phosphorylase in sRNA function in Escherichia coli (Q34985832)

5 August 2017

title

Role of polynucleotide phosphorylase in sRNA function in Escherichia coli (English)

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5 August 2017

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Susan Gottesman

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5 August 2017

Nicholas De Lay

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5 August 2017

language of work or name

English

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publication date

28 April 2011

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5 August 2017

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5 August 2017

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5 August 2017

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5 August 2017

page(s)

1172-1189

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RNAs actively cycle on the Sm-like protein Hfq.

5 August 2017

cites work

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Mechanism of positive regulation by DsrA and RprA small noncoding RNAs: pairing increases translation and protects rpoS mRNA from degradation

8 July 2018

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Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

8 July 2018

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A genetic approach for finding small RNAs regulators of genes of interest identifies RybC as regulating the DpiA/DpiB two-component system

8 July 2018

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Regulatory RNAs in bacteria

8 July 2018

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The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior

8 July 2018

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The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

8 July 2018

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RNA, but not protein partners, is directly responsible for translational silencing by a bacterial Hfq-binding small RNA.

8 July 2018

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Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

8 July 2018

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PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

8 July 2018

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Characterization of the role of ribonucleases in Salmonella small RNA decay

8 July 2018

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Hfq structure, function and ligand binding

8 July 2018

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Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites

8 July 2018

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Polynucleotide phosphorylase interacts with ribonuclease E through a betabetaalphabetabetaalpha domain.

8 July 2018

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Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs

8 July 2018

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Effect of RyhB small RNA on global iron use in Escherichia coli

8 July 2018

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RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs

8 July 2018

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Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli

8 July 2018

1 reference

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Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs

8 July 2018

1 reference

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Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

8 July 2018

1 reference

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The bacterial Sm-like protein Hfq: a key player in RNA transactions

8 July 2018

1 reference

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Global analysis of small RNA and mRNA targets of Hfq

8 July 2018

1 reference

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RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

8 July 2018

1 reference

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

8 July 2018

1 reference

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Accumulation of glucose 6-phosphate or fructose 6-phosphate is responsible for destabilization of glucose transporter mRNA in Escherichia coli

8 July 2018

1 reference

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DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E.

8 July 2018

1 reference

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A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome

8 July 2018

1 reference

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

8 July 2018

1 reference

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

8 July 2018

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Identification of novel small RNAs using comparative genomics and microarrays

8 July 2018

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Increased expression of Escherichia coli polynucleotide phosphorylase at low temperatures is linked to a decrease in the efficiency of autocontrol

8 July 2018

1 reference

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Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli

8 July 2018

1 reference

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Regulation of RpoS by a novel small RNA: the characterization of RprA

8 July 2018

1 reference

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

8 July 2018

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An efficient recombination system for chromosome engineering in Escherichia coli

8 July 2018

1 reference

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DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

8 July 2018

1 reference

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Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

An essential function for the phosphate-dependent exoribonucleases RNase PH and polynucleotide phosphorylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Efficient translation of the RpoS sigma factor in Salmonella typhimurium requires host factor I, an RNA-binding protein encoded by the hfq gene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Proteins associated with RNase E in a multicomponent ribonucleolytic complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

A protein complex mediating mRNA degradation in Escherichia coli.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Mutations in a new chromosomal gene of Escherichia coli K-12, pcnB, reduce plasmid copy number of pBR322 and its derivatives.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Genetics and sequence analysis of the pcnB locus, an Escherichia coli gene involved in plasmid copy number control

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Identification and sequence determination of the host factor gene for bacteriophage Q beta

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

7 Uses of transposons with emphasis on Tn10

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Enolase in the RNA degradosome plays a crucial role in the rapid decay of glucose transporter mRNA in the response to phosphosugar stress in Escherichia coli

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Function in Escherichia coli of the non-catalytic part of RNase E: role in the degradation of ribosome-free mRNA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Polynucleotide phosphorylase is necessary for competence development in Bacillus subtilis

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Bacterial proteins required for replication of phage Q ribonucleic acid. Pruification and properties of host factor I, a ribonucleic acid-binding protein

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Cloning and characterization of an Escherichia coli gene, pcnB, affecting plasmid copy number

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3096048

Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21527671

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.2531211

1 reference

5 August 2017

1 reference

5 August 2017

1 reference