Structure-based identification of catalytic residues. (Q34975441)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21491495%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

title

Structure-based identification of catalytic residues (English)

1 reference

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28 January 2020

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28 January 2020

Ran Yahalom

1 reference

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28 January 2020

Dan Reshef

1 reference

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28 January 2020

Ayana Wiener

1 reference

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28 January 2020

Sagiv Frankel

1 reference

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28 January 2020

Boaz Lerner

1 reference

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28 January 2020

Chen Keasar

1 reference

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28 January 2020

language of work or name

English

0 references

publication date

12 April 2011

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28 January 2020

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28 January 2020

volume

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28 January 2020

issue

1 reference

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28 January 2020

page(s)

1952-1963

1 reference

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Identification of catalytic residues from protein structure using support vector machine with sequence and structural features.

28 January 2020

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8 July 2018

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8 July 2018

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Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties

8 July 2018

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Dynamical contributions to enzyme catalysis: critical tests of a popular hypothesis

8 July 2018

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Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

8 July 2018

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8 July 2018

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EzCatDB: the Enzyme Catalytic-mechanism Database

8 July 2018

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Searching for functional sites in protein structures.

8 July 2018

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The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

8 July 2018

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Protein informatics towards function identification

8 July 2018

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Structural bases of stability-function tradeoffs in enzymes

8 July 2018

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THEMATICS: a simple computational predictor of enzyme function from structure

8 July 2018

1 reference

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Prediction of functionally important residues based solely on the computed energetics of protein structure.

8 July 2018

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Assessing the accuracy of prediction algorithms for classification: an overview

8 July 2018

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The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules

8 July 2018

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8 July 2018

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Evolution of protein function, from a structural perspective

8 July 2018

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8 July 2018

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Finding families for genomic ORFans

8 July 2018

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Structural investigation of the cofactor-free chloroperoxidases

8 July 2018

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Structures of two novel crystal forms of Naja naja naja phospholipase A2 lacking Ca2+ reveal trimeric packing

8 July 2018

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Crystal structure of phospholipase A2 from Indian cobra reveals a trimeric association

8 July 2018

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A relationship between protein stability and protein function

8 July 2018

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Evaluation of catalytic free energies in genetically modified proteins

8 July 2018

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Site-directed mutants of staphylococcal nuclease. Detection and localization by 1H NMR spectroscopy of conformational changes accompanying substitutions for glutamic acid-43.

8 July 2018

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Mutation of conserved residues in Escherichia coli thioredoxin: Effects on stability and function

8 July 2018

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Comparison of the predicted and observed secondary structure of T4 phage lysozyme

8 July 2018

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8 July 2018

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Energetics of enzyme catalysis

21 January 2018

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Evaluation of features for catalytic residue prediction in novel folds

8 July 2018

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Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation

21 January 2018

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Target selection and deselection at the Berkeley Structural Genomics Center

21 January 2018

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Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces

21 January 2018

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Analysis of catalytic residues in enzyme active sites

21 January 2018

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Enzyme/non-enzyme discrimination and prediction of enzyme active site location using charge-based methods

21 January 2018

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Analysis of protein structures reveals regions of rare backbone conformation at functional sites.

21 January 2018

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Using a neural network and spatial clustering to predict the location of active sites in enzymes

21 January 2018

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An introduction to ROC analysis

21 January 2018

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Wrappers for feature subset selection

21 January 2018

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A Tutorial on Support Vector Machines for Pattern Recognition

21 January 2018

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Strain in protein structures as viewed through nonrotameric side chains: II. effects upon ligand binding.

21 January 2018

1 reference

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Stability and function: two constraints in the evolution of barstar and other proteins

26 October 2018

1 reference

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Network Analysis of Protein Structures Identifies Functional Residues

26 October 2018

1 reference

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Amino acid substitutions that increase the thermal stability of the lambda Cro protein

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21491495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of the steric strain in the polypeptide backbone of protein molecules

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21491495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Effect of active site residues in barnase on activity and stability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21491495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.23020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21491495%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21491495%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

PubMed publication ID

21491495

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21491495%20AND%20SRC:MED&resulttype=core&format=json