PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence (Q34974203)

5 August 2017

title

PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence (English)

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5 August 2017

1 reference

Z R Li

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5 August 2017

H H Lin

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5 August 2017

L Y Han

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5 August 2017

L Jiang

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5 August 2017

X Chen

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5 August 2017

Y Z Chen

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5 August 2017

language of work or name

English

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publication date

1 July 2006

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

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5 August 2017

issue

Web Server issue

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5 August 2017

page(s)

W32-7

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Predicting functional family of novel enzymes irrespective of sequence similarity: a statistical learning approach

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of protein subcellular locations by GO-FunD-PseAA predictor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of RNA-binding proteins from primary sequence by a support vector machine approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Brownian dynamics simulations of the recognition of the scorpion toxin maurotoxin with the voltage-gated potassium ion channels

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Classifying G-protein coupled receptors with support vector machines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Predicting protein--protein interactions from primary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of protein subcellular locations by incorporating quasi-sequence-order effect

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of membrane protein types based on the hydrophobic index of amino acids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

AAindex: amino acid index database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Themes in RNA-protein recognition.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Recognition of a protein fold in the context of the Structural Classification of Proteins (SCOP) classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

The rational design of amino acid sequences by artificial neural networks and simulated molecular evolution: de novo design of an idealized leader peptidase cleavage site

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

The DEF data base of sequence based protein fold class predictions.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of protein folding class using global description of amino acid sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

The structural dependence of amino acid hydrophobicity parameters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

On the average hydrophobicity of proteins and the relation between it and protein structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Amino acid difference formula to help explain protein evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

The nature of the accessible and buried surfaces in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of the functional class of lipid binding proteins from sequence-derived properties irrespective of sequence similarity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of functional class of novel bacterial proteins without the use of sequence similarity by a statistical learning method

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Prediction of transporter family from protein sequence by support vector machine approach.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Effect of training datasets on support vector machine prediction of protein-protein interactions

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Effect of molecular descriptor feature selection in support vector machine classification of pharmacokinetic and toxicological properties of chemical agents.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Classification of nuclear receptors based on amino acid composition and dipeptide composition.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Enzyme family classification by support vector machines

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Support vector machine classification on the web.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Whole-proteome interaction mining

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

A novel approach to the recognition of protein architecture from sequence using Fourier analysis and neural networks

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Accurate prediction of protein secondary structural content.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Support vector machine approach for protein subcellular localization prediction

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Multi-class protein fold recognition using support vector machines and neural networks

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Structure-activity relationship of P-glycoprotein substrates and modifiers

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Protein fold class prediction: new methods of statistical classification.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538821

Molecular modeling study of diltiazem mimics at L-type calcium channels

9 December 2018

1 reference

12 December 2020

Protein folding and the genetic code: An alternative quantitative model

1 reference

12 December 2020

Prediction of protein helix content from an autocorrelation analysis of sequence hydrophobicities

1 reference

12 December 2020

Hydrophobicity and structural classes in proteins

1 reference

12 December 2020

Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins

1 reference

12 December 2020

Notes on Continuous Stochastic Phenomena

1 reference

12 December 2020

Prediction of functional class of novel viral proteins by a statistical learning method irrespective of sequence similarity

1 reference

12 December 2020

Population structure inferred by local spatial autocorrelation: an example from an Amerindian tribal population

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL305

1 reference

5 August 2017

DBLP publication ID

journals/nar/LiLHJCC06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference