Improving peptide identification sensitivity in shotgun proteomics by stratification of search space (Q34719011)

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English	Improving peptide identification sensitivity in shotgun proteomics by stratification of search space	scientific article

Statements

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scholarly article

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Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

title

Improving peptide identification sensitivity in shotgun proteomics by stratification of search space (English)

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stated in

Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

main subject

Shotgun proteomics

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based on heuristic

inferred from title

author name string

Gelio Alves

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1

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Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

Yi-Kuo Yu

series ordinal

2

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stated in

Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

publication date

29 May 2013

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stated in

Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

published in

Journal of Proteome Research

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stated in

Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

volume

12

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stated in

Europe PubMed Central

PubMed publication ID

23668635

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4 August 2017

issue

6

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stated in

Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

page(s)

2571-2581

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Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

cites work

BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Large improvements in MS/MS-based peptide identification rates using a hybrid analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Comment on "Unbiased statistical analysis for multi-stage proteomic search strategies".

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Assigning statistical significance to proteotypic peptides via database searches

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Techniques for accurate protein identification in shotgun proteomic studies of human, mouse, bovine, and chicken lenses

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Data maximization by multipass analysis of protein mass spectra

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Altered proteolytic events in experimental autoimmune encephalomyelitis discovered by iTRAQ shotgun proteomics analysis of spinal cord

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Statistical calibration of the SEQUEST XCorr function

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Does trypsin cut before proline?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

RAId_DbS: peptide identification using database searches with realistic statistics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

How do shotgun proteomics algorithms identify proteins?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Current trends in computational inference from mass spectrometry-based proteomics.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Protein identification by spectral networks analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Improving gene annotation using peptide mass spectrometry

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Identification of post-translational modifications via blind search of mass-spectra

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Statistical significance for genomewide studies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

7 July 2018

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

26 October 2018

Fast and accurate identification of semi-tryptic peptides in shotgun proteomics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

26 October 2018

Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic-aqueous solvent systems

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

26 October 2018

Trypsin cleaves exclusively C-terminal to arginine and lysine residues

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

26 October 2018

Head-to-Head Comparison of Serum Fractionation Techniques

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753091

retrieved

9 December 2018

Identifiers

DOI

10.1021/PR301139Y

1 reference

stated in

Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

PMC publication ID

3753091

1 reference

stated in

Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

PubMed publication ID

23668635

1 reference

stated in

Europe PubMed Central

PubMed publication ID

23668635

retrieved

4 August 2017

 

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