Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA (Q34676099)

3 August 2017

title

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA (English)

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3 August 2017

F A Kolb

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3 August 2017

H M Engdahl

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3 August 2017

J G Slagter-Jäger

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3 August 2017

B Ehresmann

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3 August 2017

C Ehresmann

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3 August 2017

E Westhof

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3 August 2017

E G Wagner

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3 August 2017

P Romby

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3 August 2017

language of work or name

English

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publication date

1 November 2000

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3 August 2017

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3 August 2017

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3 August 2017

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3 August 2017

page(s)

5905-5915

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Convergent transcription interferes with expression of the copy number control gene, copA, from plasmid R1.

3 August 2017

cites work

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U-turns and regulatory RNAs

7 July 2018

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An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

7 July 2018

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The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence

7 July 2018

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Hierarchy and dynamics of RNA folding

7 July 2018

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Ribosomal protein S15 from Thermus thermophilus--cloning, sequencing, overexpression of the gene and RNA-binding properties of the protein

7 July 2018

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Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

7 July 2018

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RNA-RNA interaction is required for the formation of specific bicoid mRNA 3' UTR-STAUFEN ribonucleoprotein particles.

7 July 2018

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Dimerization of retroviral genomic RNAs: structural and functional implications

7 July 2018

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An antisense/target RNA duplex or a strong intramolecular RNA structure 5' of a translation initiation signal blocks ribosome binding: the case of plasmid R1.

7 July 2018

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Kinetic aspects of control of plasmid replication by antisense RNA.

7 July 2018

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Antisense RNA control in bacteria, phages, and plasmids

7 July 2018

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Mutations affecting pseudoknot control of the replication of B group plasmids

7 July 2018

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Interaction between the antisense and target RNAs involved in the regulation of IncB plasmid replication

7 July 2018

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7 July 2018

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Bent helix formation between RNA hairpins with complementary loops

7 July 2018

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Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivo

7 July 2018

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Mechanism of binding of the antisense and target RNAs involved in the regulation of IncB plasmid replication

7 July 2018

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Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription

7 July 2018

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Control of replication of bacterial plasmids: Genetics, molecular biology, and physiology of the plasmid R1 system

7 July 2018

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Control of cole 1 plasmid replication: The process of binding of RNA I to the primer transcript

7 July 2018

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Secondary structure analysis of the RepA mRNA leader transcript involved in control of replication of plasmid R1.

7 July 2018

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Control of replication of plasmid R1: kinetics of in vitro interaction between the antisense RNA, CopA, and its target, CopT.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Structural analysis of an RNA molecule involved in replication control of plasmid R1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Control of replication of plasmid R1: the intergenic region between copA and repA modulates the level of expression of repA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Control of replication of plasmid R1: formation of an initial transient complex is rate-limiting for antisense RNA-target RNA pairing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Control of replication of plasmid R1: structures and sequences of the antisense RNA, CopA, required for its binding to the target RNA, CopT.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Replication control of plasmid R1: RepA synthesis is regulated by CopA RNA through inhibition of leader peptide translation

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

Replication control in plasmid R1: duplex formation between the antisense RNA, CopA, and its target, CopT, is not required for inhibition of RepA synthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305787

3'-terminal labelling of RNA with T4 RNA ligase

7 July 2018

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A dimer as a building block in assembling RNA. A hexamer that gears bacterial virus phi29 DNA-translocating machinery

7 July 2018

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The uridine in "U-turn": contributions to tRNA-ribosomal binding

26 October 2018

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Structural basis for binding of the plasmid ColIb-P9 antisense Inc RNA to its target RNA with the 5'-rUUGGCG-3' motif in the loop sequence

26 October 2018

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12 December 2020

Regulation of replication of plasmid R1: An analysis of the intergenic region between copA and repA

1 reference

12 December 2020

Replication control of plasmid R1: disruption of an inhibitory RNA structure that sequesters the repA ribosome-binding site permits tap-independent RepA synthesis

1 reference

12 December 2020

Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?

1 reference

12 December 2020

Copy mutants of plasmid R1: effects of base pair substitutions in the copA gene on the replication control system

1 reference

12 December 2020

Control of ColE1 plasmid replication: initial interaction of RNA I and the primer transcript is reversible

1 reference

12 December 2020

Positive and negative regulations of plasmid CoLIb-P9 repZ gene expression at the translational level

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12 December 2020

Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells

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12 December 2020

Control of ColE1 plasmid replication. Interaction of Rom protein with an unstable complex formed by RNA I and RNA II

1 reference

12 December 2020

Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure

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Complexes formed by complementary RNA stem-loops. Their formations, structures and interaction with ColE1 Rom protein

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12 December 2020

Identifiers

DOI

10.1093/EMBOJ/19.21.5905

1 reference

3 August 2017

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3 August 2017

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