Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing (Q34664803)

3 August 2017

title

Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing (English)

1 reference

bZIP transcription factor

3 August 2017

0 references

1 reference

Positive transcriptional regulator of purine utilization

5 February 2019

1 reference

Ortholog(s) have G-protein alpha-subunit binding, GDP-dissociation inhibitor activity, protein kinase C binding, ribosome binding activity

5 February 2019

1 reference

Putative isocitrate lyase

5 February 2019

1 reference

5 February 2019

1 reference

5 February 2019

F1F0-ATPase complex subunit

1 reference

Ortholog(s) have copper ion binding activity, role in aerobic respiration, protein complex assembly and mitochondrial inner membrane, mitochondrial intermembrane space, mitochondrial ribosome, plasma membrane localization

5 February 2019

1 reference

Mannitol 1-phosphate dehydrogenase (MPD)

5 February 2019

1 reference

NAD+-dependent glutamate dehydrogenase

5 February 2019

1 reference

Ortholog(s) have mannitol 2-dehydrogenase activity and extracellular region localization

5 February 2019

1 reference

Has domain(s) with predicted nucleobase transmembrane transporter activity, role in nucleobase transport, transmembrane transport and membrane localization

5 February 2019

1 reference

NADP-dependent glutamate dehydrogenase

5 February 2019

1 reference

Putative oxoglutarate dehydrogenase

5 February 2019

1 reference

Glycerol kinase with a predicted role in glycerol metabolism

5 February 2019

1 reference

Fructose-2,6-bisphosphatase

5 February 2019

1 reference

Ortholog(s) have purine nucleobase binding, urate transmembrane transporter activity, xanthine transmembrane transporter activity and role in cellular response to ammonium ion, urate transport, xanthine transport

5 February 2019

1 reference

Ortholog(s) have nucleolus localization

6 February 2019

1 reference

Putative alpha, alpha-trehalose-phosphate synthase

6 February 2019

1 reference

Ortholog(s) have long-chain fatty acid transporter activity, very long-chain fatty acid-CoA ligase activity and role in long-chain fatty acid transport, very long-chain fatty acid metabolic process

6 February 2019

1 reference

Glycerol 3-phosphate dehydrogenase (FAD-dependent sn-glycerol-3-phosphate dehydrogenase)

6 February 2019

1 reference

NADH-ubiquinone oxidoreductase

6 February 2019

1 reference

Carnitine O-acetyltransferase

6 February 2019

1 reference

Putative isocitrate dehydrogenase (NAD+)

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative nitrite reductase

1 reference

Putative nitrate transporter

6 February 2019

1 reference

putative transcription factor

6 February 2019

1 reference

6 February 2019

Glutamate decarboxylase

1 reference

Alpha,alpha-trehalose phosphate synthase (UDP-forming)

6 February 2019

1 reference

Ortholog of Aspergillus tubingensis : Asptu1_0190972, Aspergillus kawachii : Aspka1_0181680, Aspergillus acidus : Aspfo1_0051750 and Aspergillus niger ATCC 1015 : 44960-mRNA

6 February 2019

1 reference

Ortholog(s) have endoplasmic reticulum localization

6 February 2019

1 reference

Putative phosphoenolpyruvate carboxykinase

6 February 2019

1 reference

Ortholog(s) have cytidine transmembrane transporter activity, drug transmembrane transporter activity, nucleobase transmembrane transporter activity

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Trehalose phosphatase

1 reference

6 February 2019

ACP acetyltransferase

1 reference

Sequence-specific DNA binding transcription regulator

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Succinate-semialdehyde dehydrogenase (NAD(P)+)

1 reference

6 February 2019

1 reference

6 February 2019

Triose-phosphate-isomerase

1 reference

6 February 2019

1 reference

6 February 2019

Ortholog(s) have L-allo-threonine aldolase activity, role in carnitine biosynthetic process, glycine biosynthetic process, threonine catabolic process and cytosol, nucleus localization

1 reference

6 February 2019

Glutamate decarboxylase

1 reference

glyceraldehyde-3-phosphate dehydrogenase

6 February 2019

1 reference

6 February 2019

Aspartate transaminase

1 reference

Gamma-aminobutyrate transaminase

6 February 2019

1 reference

Ortholog(s) have succinate-CoA ligase (ADP-forming) activity, role in succinyl-CoA metabolic process and mitochondrial nucleoid localization

6 February 2019

1 reference

Ortholog(s) have protein domain specific binding, transcription regulatory region DNA binding activity

6 February 2019

1 reference

Putative isocitrate dehydrogenase (NAD+)

6 February 2019

1 reference

6 February 2019

1 reference

Steven T Pullan

0 references

Michaela Novodvorska

1 reference

3 August 2017

Kimran Hayer

1 reference

3 August 2017

Raymond Wilson

1 reference

3 August 2017

Martin J Blythe

1 reference

3 August 2017

Hein Stam

1 reference

3 August 2017

Malcolm Stratford

1 reference

3 August 2017

David B Archer

1 reference

3 August 2017

language of work or name

English

0 references

publication date

11 April 2013

1 reference

3 August 2017

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3 August 2017

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3 August 2017

page(s)

246

1 reference

The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Repression of meiotic genes by antisense transcription and by Fkh2 transcription factor in Schizosaccharomyces pombe

7 July 2018

1 reference

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Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

A novel family of dehydrin-like proteins is involved in stress response in the human fungal pathogen Aspergillus fumigatus.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Integrative genomics viewer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Proteome profiling and functional classification of intracellular proteins from conidia of the human-pathogenic mold Aspergillus fumigatus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Estimating accuracy of RNA-Seq and microarrays with proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Proteomic analysis of Aspergillus nidulans cultured under hypoxic conditions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Basal expression of the Aspergillus fumigatus transcriptional activator CpcA is sufficient to support pulmonary aspergillosis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Fungal nucleobase transporters.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Germination of penicillium paneum Conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Mannitol is required for stress tolerance in Aspergillus niger conidiospores

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Apparent genetic redundancy facilitates ecological plasticity for nitrate transport

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Contribution of Cat8 and Sip4 to the transcriptional activation of yeast gluconeogenic genes by carbon source-responsive elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The molecular mechanisms of conidial germination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

SGD1 encodes an essential nuclear protein of Saccharomyces cerevisiae that affects expression of the GPD1 gene for glycerol 3-phosphate dehydrogenase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Mapping of the nitrate-assimilation gene cluster (crnA-niiA-niaD) and characterization of the nitrite reductase gene (niiA) in the opportunistic fungal pathogen Aspergillus fumigatus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The filamentous fungus Aspergillus niger contains two "differentially regulated" trehalose-6-phosphate synthase-encoding genes, tpsA and tpsB.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The Aspergillus niger GCN4 homologue, cpcA, is transcriptionally regulated and encodes an unusual leucine zipper

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Regulation of sulfur and nitrogen metabolism in filamentous fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Molecular cloning, characterization, and nucleotide sequence of nit-6, the structural gene for nitrite reductase in Neurospora crassa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Positive regulation in a eukaryote, a study of the uaY gene of Aspergillus nidulans: I. Characterization of alleles, dominance and complementation studies, and a fine structure map of the uaY--oxpA cluster.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Regulation and glutamic acid decarboxylase during Neurospora crassa conidial germination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

13C NMR studies of carbon metabolism in the hyphal fungus Aspergillus nidulans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans. Mutations affecting specificity of gene activation alter a loop residue of a putative zinc finger

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The uaY positive control gene of Aspergillus nidulans: fine structure, isolation of constitutive mutants and reversion patterns.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Mapping the structural requirements of inducers and substrates for decarboxylation of weak acid preservatives by the food spoilage mould Aspergillus niger

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Proteomic analysis of early phase of conidia germination in Aspergillus nidulans.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Analysis of the regulation, expression, and localisation of the isocitrate lyase from Aspergillus fumigatus, a potential target for antifungal drug development.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

GABA shunt deficiencies and accumulation of reactive oxygen intermediates: insight from Arabidopsis mutants

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Polyol accumulation by Aspergillus oryzae at low water activity in solid-state fermentation

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

mRNA decay is rapidly induced after spore germination of Saccharomyces cerevisiae

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Changes in lipid composition and carbohydrate composition of Aspergillus niger conidia during germination

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

c-Jun and RACK1 homologues regulate a control point for sexual development in Aspergillus nidulans

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Neutral trehalases catalyse intracellular trehalose breakdown in the filamentous fungi Aspergillus nidulans and Neurospora crassa

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Polyol pools in Aspergillus niger

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

The Aspergillus niger carbon catabolite repressor encoding gene, creA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3635940

Molecular Characterization of Mutants of the Acetate Regulatory GenefacBofAspergillus nidulans

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23577966

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The proline transport protein of Aspergillus nidulans is very similar to amino acid transporters of Saccharomyces cerevisiae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23577966

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Role of respiration in the germination process of the pathogenic mold Aspergillus fumigatus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23577966

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-14-246

1 reference

Dimensions Publication ID

3 August 2017

0 references

1 reference

3 August 2017

1 reference