Simple and accurate estimation of ancestral protein sequences (Q34600238)

3 August 2017

title

Simple and accurate estimation of ancestral protein sequences (English)

1 reference

3 August 2017

Barry G Hall

1 reference

3 August 2017

language of work or name

English

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publication date

27 March 2006

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Proceedings of the National Academy of Sciences of the United States of America

3 August 2017

published in

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3 August 2017

volume

103

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3 August 2017

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3 August 2017

page(s)

5431-5436

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Resurrecting ancestral alcohol dehydrogenases from yeast

3 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Reconstruction of ancestral protein sequences and its applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins

7 July 2018

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MrBayes 3: Bayesian phylogenetic inference under mixed models

7 July 2018

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Recreating a functional ancestral archosaur visual pigment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Phylogenetic analysis shows that the OXA beta-lactamase genes have been on plasmids for millions of years

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

MRBAYES: Bayesian inference of phylogenetic trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

A fast algorithm for joint reconstruction of ancestral amino acid sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

The structural basis of molecular adaptation

7 July 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

PAML: a program package for phylogenetic analysis by maximum likelihood

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Probabilistic reconstruction of ancestral protein sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 July 2018

1 reference

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Total synthesis and cloning of a gene coding for the ribonuclease S protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Ancestral lysozymes reconstructed, neutrality tested, and thermostability linked to hydrocarbon packing.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

The ribonuclease from an extinct bovid ruminant

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1459372

Angiotensin II-forming activity in a reconstructed ancestral chymase

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16567642

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16567642

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0508991103

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference