Structural insights on the translation initiation complex: ghosts of a universal initiation complex (Q34604514)

3 August 2017

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title

Structural insights on the translation initiation complex: ghosts of a universal initiation complex (English)

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3 August 2017

Joachim Frank

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author name string

Gregory S Allen

series ordinal

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3 August 2017

language of work or name

English

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publication date

1 February 2007

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3 August 2017

published in

Molecular Microbiology

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3 August 2017

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3 August 2017

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3 August 2017

page(s)

941-950

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In vitro phosphorylation of initiation factor 2 alpha (aIF2 alpha) from hyperthermophilic archaeon Pyrococcus horikoshii OT3.

3 August 2017

cites work

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Effect of Escherichia coli initiation factors on the kinetics of N-AcPhe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study

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Sulfolobus solfataricus translation initiation factor 1 stimulates translation initiation complex formation

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Tracing the evolution of RNA structure in ribosomes

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Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo

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Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs

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Interaction of Escherichia coli translation-initiation factor IF-1 with ribosomes.

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How initiation factors tune the rate of initiation of protein synthesis in bacteria

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Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control

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eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation

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Modern metabolism as a palimpsest of the RNA world

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Mechanism of recycling of post-termination ribosomal complexes in eubacteria: a new role of initiation factor 3.

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Interaction of translation initiation factor 3 with the 30S ribosomal subunit

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Splitting of the posttermination ribosome into subunits by the concerted action of RRF and EF-G.

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Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus

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Structure of archaeal translational initiation factor 2 betagamma-GDP reveals significant conformational change of the beta-subunit and switch 1 region

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Requirement for Ribosome‐Releasing Factor for the Release of Ribosomes at the Termination Codon

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Mapping the binding interface between human eukaryotic initiation factors 1A and 5B: a new interaction between old partners

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ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae

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Both forms of translational initiation factor IF2 (alpha and beta) are required for maximal growth of Escherichia coli. Evidence for two translational initiation codons for IF2 beta

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A leaderless mRNA can bind to mammalian 80S ribosomes and direct polypeptide synthesis in the absence of translation initiation factors

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GTPases mechanisms and functions of translation factors on the ribosome

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Regulation of translation via mRNA structure in prokaryotes and eukaryotes

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Sequence of steps in ribosome recycling as defined by kinetic analysis.

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A conformational change in the eukaryotic translation preinitiation complex and release of eIF1 signal recognition of the start codon

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Engaging the ribosome: universal IFs of translation.

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Junction of the 50S ribosomal subunit with the 30S initiation complex

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Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli

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The eIF1A solution structure reveals a large RNA-binding surface important for scanning function

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11 October 2022

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Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria.

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Initiation factor eIF5B catalyzes second GTP-dependent step in eukaryotic translation initiation

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11 October 2022

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Initiation of protein synthesis in bacteria

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11 October 2022

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Novel roles for classical factors at the interface between translation termination and initiation

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11 October 2022

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A conserved structural motif at the N terminus of bacterial translation initiation factor IF2

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11 October 2022

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Universally conserved translation initiation factors

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The genetic core of the universal ancestor

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11 October 2022

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Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes

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11 October 2022

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The cryo-EM structure of a translation initiation complex from Escherichia coli

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11 October 2022

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Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.

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11 October 2022

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Structure and dynamics of translation initiation factor aIF-1A from the archaeon Methanococcus jannaschii determined by NMR spectroscopy

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11 October 2022

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Functions of eukaryotic factors in initiation of translation

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11 October 2022

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Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing

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11 October 2022

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In vitro study of two dominant inhibitory GTPase mutants of Escherichia coli translation initiation factor IF2. Direct evidence that GTP hydrolysis is necessary for factor recycling

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11 October 2022

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Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation

1 reference

11 October 2022

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Temperature-dependent translation of leaderless and canonical mRNAs in Escherichia coli

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Translation initiation: structures, mechanisms and evolution

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

What determines whether mammalian ribosomes resume scanning after translation of a short upstream open reading frame?

1 reference

11 October 2022

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Translation initiation factor IF3: two domains, five functions, one mechanism?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Interaction of fMet-tRNA(fMet) with the C-terminal domain of translational initiation factor IF2 from Bacillus stearothermophilus.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Binding of Escherichia coli protein synthesis initiation factor IF1 to 30S ribosomal subunits measured by fluorescence polarization.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Initiation of mRNA translation in prokaryotes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Communication between eukaryotic translation initiation factors 1 and 1A on the yeast small ribosomal subunit

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

A complex between initiation factor IF2, guanosine triphosphate, and fMet-tRNA: an intermediate in initiation complex formation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Escherichia coli translation initiation factor 3 discriminates the initiation codon in vivo

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Crystal structure of an initiation factor bound to the 30S ribosomal subunit

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Interaction between eukaryotic initiation factors 1A and 5B is required for efficient ribosomal subunit joining.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Discrimination by Escherichia coli initiation factor IF3 against initiation on non-canonical codons relies on complementarity rules

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection

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11 October 2022

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The joining of ribosomal subunits in eukaryotes requires eIF5B.

1 reference

11 October 2022

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Factor-dependent release of ribosomes from messenger RNA. Requirement for two heat-stable factors

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Pi release from eIF2, not GTP hydrolysis, is the step controlled by start-site selection during eukaryotic translation initiation

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Modeling a minimal ribosome based on comparative sequence analysis

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11 October 2022

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Initiator tRNA binding by e/aIF5B, the eukaryotic/archaeal homologue of bacterial initiation factor IF2.

1 reference

11 October 2022

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tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

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11 October 2022

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Eukaryotic translation initiation factor 3 (eIF3) and eIF2 can promote mRNA binding to 40S subunits independently of eIF4G in yeast

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The N-terminal domain (IF2N) of bacterial translation initiation factor IF2 is connected to the conserved C-terminal domains by a flexible linker

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The eIF1A C-terminal domain promotes initiation complex assembly, scanning and AUG selection in vivo

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11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Translation initiation factor IF2 interacts with the 30 S ribosomal subunit via two separate binding sites

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The fidelity of translation initiation: reciprocal activities of eIF1, IF3 and YciH.

1 reference

11 October 2022

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The scanning model for translation: an update

1 reference

11 October 2022

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Unfolding of mRNA secondary structure by the bacterial translation initiation complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The archaeal eIF2 homologue: functional properties of an ancient translation initiation factor

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Ribosome formation from subunits studied by stopped-flow and rayleigh light scattering

1 reference

11 October 2022

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Analysis of SD sequences in completed microbial genomes: non-SD-led genes are as common as SD-led genes

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Mammalian translation initiation factor eIF1 functions with eIF1A and eIF3 in the formation of a stable 40 S preinitiation complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Ribosomal localization of translation initiation factor IF2

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Mapping the fMet-tRNA(f)(Met) binding site of initiation factor IF2.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Translation initiation: adept at adapting

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilum

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Domains of initiator tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1111/J.1365-2958.2006.05574.X

Identifiers

DOI

10.1111/J.1365-2958.2006.05574.X

1 reference

3 August 2017

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