SVMHC: a server for prediction of MHC-binding peptides (Q34547980)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

SVMHC: a server for prediction of MHC-binding peptides (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

Pierre Dönnes

1 reference

PubMed publication ID

16844990

2 August 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

published in

Nucleic Acids Research

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27 December 2019

volume

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27 December 2019

issue

Web Server issue

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27 December 2019

page(s)

W194-7

1 reference

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HIV vaccine development by computer assisted design: the GAIA vaccine

27 December 2019

cites work

1 reference

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Modeling the structure of bound peptide ligands to major histocompatibility complex

7 July 2018

1 reference

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Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection

7 July 2018

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7 July 2018

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Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

7 July 2018

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7 July 2018

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Prediction of MHC class I binding peptides, using SVMHC

7 July 2018

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From genome to vaccine: in silico predictions, ex vivo verification.

7 July 2018

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Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

7 July 2018

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Mechanisms of viral interference with MHC class I antigen processing and presentation

7 July 2018

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SYFPEITHI: database for MHC ligands and peptide motifs

7 July 2018

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Definition of an HLA-A3-like supermotif demonstrates the overlapping peptide-binding repertoires of common HLA molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

7 July 2018

1 reference

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Prominent roles of secondary anchor residues in peptide binding to HLA-A24 human class I molecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis

7 July 2018

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SNEP: SNP-derived epitope prediction program for minor H antigens.

7 July 2018

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Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

HIV-1 superinfection despite broad CD8+ T-cell responses containing replication of the primary virus

27 October 2018

1 reference

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Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Neural network-based prediction of candidate T-cell epitopes.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Vaccination of patients with B-cell lymphoma using autologous antigen-pulsed dendritic cells

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538857

Recovery of known T-cell epitopes by computational scanning of a viral genome

9 December 2018

1 reference

12 December 2020

Exact prediction of a natural T cell epitope

1 reference

12 December 2020

Molecular Dynamics Simulation of MHC-Peptide Complexes as a Tool for Predicting Potential T Cell Epitopes

1 reference

12 December 2020

Specificity and degeneracy in peptide binding to HLA-B7-like class I molecules

1 reference

12 December 2020

Vaccination of melanoma patients with peptide- or tumor lysate-pulsed dendritic cells

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL284

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

DBLP publication ID

journals/nar/DonnesK06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

PubMed publication ID

16844990

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844990%20AND%20SRC:MED&resulttype=core&format=json