Combining multiple ChIP-seq peak detection systems using combinatorial fusion (Q34530154)

2 August 2017

title

Combining multiple ChIP-seq peak detection systems using combinatorial fusion (English)

1 reference

2 August 2017

Christina Schweikert

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2 August 2017

Stuart Brown

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2 August 2017

Zuojian Tang

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2 August 2017

Phillip R Smith

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2 August 2017

D Frank Hsu

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2 August 2017

language of work or name

English

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publication date

17 December 2012

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2 August 2017

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2 August 2017

volume

13 Suppl 8

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2 August 2017

page(s)

S12

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Effects of nickel treatment on H3K4 trimethylation and gene expression

2 August 2017

cites work

1 reference

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Evaluation of algorithm performance in ChIP-seq peak detection

7 July 2018

1 reference

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HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data

7 July 2018

1 reference

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A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

7 July 2018

1 reference

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A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

7 July 2018

1 reference

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Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data

7 July 2018

1 reference

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Computation for ChIP-seq and RNA-seq studies

7 July 2018

1 reference

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BayesPeak: Bayesian analysis of ChIP-seq data

7 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 July 2018

1 reference

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535708

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

7 July 2018

1 reference

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Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

7 July 2018

1 reference

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

7 July 2018

1 reference

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An integrated software system for analyzing ChIP-chip and ChIP-seq data

7 July 2018

1 reference

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Next-generation DNA sequencing

7 July 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

7 July 2018

1 reference

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F-Seq: a feature density estimator for high-throughput sequence tags

7 July 2018

1 reference

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

7 July 2018

1 reference

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

7 July 2018

1 reference

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FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

7 July 2018

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 July 2018

1 reference

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ChIP-chip for genome-wide analysis of protein binding in mammalian cells

7 July 2018

1 reference

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The impact of next-generation sequencing technology on genetics

7 July 2018

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Feature selection and combination criteria for improving accuracy in protein structure prediction.

7 July 2018

1 reference

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Genome-wide mapping of in vivo protein-DNA interactions

7 July 2018

1 reference

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Identification of degenerate motifs using position restricted selection and hybrid ranking combination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535708

Consensus scoring criteria for improving enrichment in virtual screening

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535708

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

7 July 2018

1 reference

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DNA sequencing with chain-terminating inhibitors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3535708

Genome-wide analysis of histone modifications by ChIP-on-chip.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-S8-S12

10.1186/1471-2164-13-S8-S12

21 January 2018

Identifiers

DOI

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Dimensions Publication ID

2 August 2017

1046528166

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Fatcat ID

release_57pnuh2n3rh43bqxwfrni2nlvq

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Fatcat

https://api.fatcat.wiki/v0/release/57pnuh2n3rh43bqxwfrni2nlvq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3535708

1 reference

2 August 2017

1 reference