Atomic force microscopy studies provide direct evidence for dimerization of the HIV restriction factor APOBEC3G (Q34536866)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21123176%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Atomic force microscopy studies provide direct evidence for dimerization of the HIV restriction factor APOBEC3G (English)

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17 January 2020

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1 reference

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17 January 2020

Reuben S Harris

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17 January 2020

Luda S Shlyakhtenko

1 reference

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17 January 2020

Alexander Y Lushnikov

series ordinal

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17 January 2020

Ming Li

series ordinal

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17 January 2020

Yuri L Lyubchenko

series ordinal

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17 January 2020

language of work or name

English

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publication date

1 December 2010

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Journal of Biological Chemistry

17 January 2020

published in

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17 January 2020

volume

286

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17 January 2020

issue

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17 January 2020

page(s)

3387-3395

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Structural model for deoxycytidine deamination mechanisms of the HIV-1 inactivation enzyme APOBEC3G

17 January 2020

cites work

1 reference

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Leveraging APOBEC3 proteins to alter the HIV mutation rate and combat AIDS.

7 July 2018

1 reference

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Crystal structure of the APOBEC3G catalytic domain reveals potential oligomerization interfaces

7 July 2018

1 reference

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APOBEC3 proteins mediate the clearance of foreign DNA from human cells

7 July 2018

1 reference

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A hydrodynamic analysis of APOBEC3G reveals a monomer-dimer-tetramer self-association that has implications for anti-HIV function.

7 July 2018

1 reference

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SSB protein diffusion on single-stranded DNA stimulates RecA filament formation.

7 July 2018

1 reference

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Human cellular restriction factors that target HIV-1 replication

7 July 2018

1 reference

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An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model

7 July 2018

1 reference

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RNA-dependent oligomerization of APOBEC3G is required for restriction of HIV-1

7 July 2018

1 reference

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Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

APOBEC proteins and intrinsic resistance to HIV-1 infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

AFM for analysis of structure and dynamics of DNA and protein-DNA complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Hypermutation by intersegmental transfer of APOBEC3G cytidine deaminase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Two regions within the amino-terminal half of APOBEC3G cooperate to determine cytoplasmic localization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

The AID/APOBEC family of nucleic acid mutators.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

A model for oligomeric regulation of APOBEC3G cytosine deaminase-dependent restriction of HIV

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Structure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Activation-induced deaminase, AID, is catalytically active as a monomer on single-stranded DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Direct visualization of the EcoRII-DNA triple synaptic complex by atomic force microscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein--DNA complexes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

APOBEC-mediated viral restriction: not simply editing?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Biochemical differentiation of APOBEC3F and APOBEC3G proteins associated with HIV-1 life cycle

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Nanostructures of APOBEC3G support a hierarchical assembly model of high molecular mass ribonucleoprotein particles from dimeric subunits.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Biochemical activities of highly purified, catalytically active human APOBEC3G: correlation with antiviral effect.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Human retroviral host restriction factors APOBEC3G and APOBEC3F localize to mRNA processing bodies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

APOBEC3G DNA deaminase acts processively 3' --> 5' on single-stranded DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

DNA strand arrangement within the SfiI-DNA complex: atomic force microscopy analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Cellular APOBEC3G restricts HIV-1 infection in resting CD4+ T cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Viral RNA is required for the association of APOBEC3G with human immunodeficiency virus type 1 nucleoprotein complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

APOBEC3G incorporation into human immunodeficiency virus type 1 particles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Amino-terminal region of the human immunodeficiency virus type 1 nucleocapsid is required for human APOBEC3G packaging

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Specific packaging of APOBEC3G into HIV-1 virions is mediated by the nucleocapsid domain of the gag polyprotein precursor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

DNA structure and dynamics: an atomic force microscopy study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

The interaction between HIV-1 Gag and APOBEC3G.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Single-strand specificity of APOBEC3G accounts for minus-strand deamination of the HIV genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

CD4 receptor localized to non-raft membrane microdomains supports HIV-1 entry. Identification of a novel raft localization marker in CD4.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

DNA deamination mediates innate immunity to retroviral infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Applications for atomic force microscopy of DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030345

Human apolipoprotein B mRNA-editing enzyme-catalytic polypeptide-like 3G (APOBEC3G) is incorporated into HIV-1 virions through interactions with viral and nonviral RNAs.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M110.195685

HIV-1 and MLV Gag proteins are sufficient to recruit APOBEC3G into virus-like particles

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M110.195685

Preparation of nuclear and cytoplasmic extracts from mammalian cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21123176

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preparation of efficient splicing extracts from whole cells, nuclei, and cytoplasmic fractions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21123176

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M110.195685

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21123176%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21123176%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

21123176

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21123176%20AND%20SRC:MED&resulttype=core&format=json