Epigenomic reorganization of the clustered Hox genes in embryonic stem cells induced by retinoic acid (Q34536795)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Epigenomic reorganization of the clustered Hox genes in embryonic stem cells induced by retinoic acid (English)

1 reference

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16 January 2020

1 reference

1 reference

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16 January 2020

Vasundhra Kashyap

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Lorraine J Gudas

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Fabienne Brenet

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

Patricia Funk

1 reference

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16 January 2020

Agnes Viale

1 reference

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16 January 2020

language of work or name

English

0 references

publication date

18 November 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

16 January 2020

published in

1 reference

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16 January 2020

volume

286

1 reference

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16 January 2020

issue

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16 January 2020

page(s)

3250-3260

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

MGMT-independent temozolomide resistance in pediatric glioblastoma cells associated with a PI3-kinase-mediated HOX/stem cell gene signature

16 January 2020

cites work

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The homeodomain protein HOXB13 regulates the cellular response to androgens

7 July 2018

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Cell-specific interaction of retinoic acid receptors with target genes in mouse embryonic fibroblasts and embryonic stem cells

7 July 2018

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Modifications of RNA polymerase II are pivotal in regulating gene expression states

7 July 2018

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Defining mechanisms that regulate RNA polymerase II transcription in vivo

7 July 2018

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Transcription factories: gene expression in unions?

7 July 2018

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Epigenetic temporal control of mouse Hox genes in vivo

7 July 2018

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DNA methylation patterns in lung carcinomas

7 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

7 July 2018

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Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis

7 July 2018

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Crosstalk among Histone Modifications

7 July 2018

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Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

7 July 2018

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Hoxa1 is required for the retinoic acid-induced differentiation of embryonic stem cells into neurons

7 July 2018

1 reference

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Retinoic acid receptor gamma activates receptor tyrosine kinase Tie1 gene transcription through transcription factor GATA4 in F9 stem cells

7 July 2018

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Changes in the distributions and dynamics of polycomb repressive complexes during embryonic stem cell differentiation

7 July 2018

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Epigenetic marking prepares the human HOXA cluster for activation during differentiation of pluripotent cells.

7 July 2018

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Gene expression profiling elucidates a specific role for RARgamma in the retinoic acid-induced differentiation of F9 teratocarcinoma stem cells

7 July 2018

1 reference

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Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

7 July 2018

1 reference

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Identification of JmjC domain-containing UTX and JMJD3 as histone H3 lysine 27 demethylases

7 July 2018

1 reference

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Hox genes in hematopoiesis and leukemogenesis.

7 July 2018

1 reference

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SMRT-mediated repression of an H3K27 demethylase in progression from neural stem cell to neuron

7 July 2018

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Retinoic acid receptor isotype specificity in F9 teratocarcinoma stem cells results from the differential recruitment of coregulators to retinoic response elements

7 July 2018

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A histone H3 lysine 27 demethylase regulates animal posterior development

7 July 2018

1 reference

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Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination

7 July 2018

1 reference

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UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development

7 July 2018

1 reference

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A histone H2A deubiquitinase complex coordinating histone acetylation and H1 dissociation in transcriptional regulation

7 July 2018

1 reference

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Retinoid regulated association of transcriptional co-regulators and the polycomb group protein SUZ12 with the retinoic acid response elements of Hoxa1, RARbeta(2), and Cyp26A1 in F9 embryonal carcinoma cells

7 July 2018

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Diverse actions of retinoid receptors in cancer prevention and treatment.

7 July 2018

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A chromatin landmark and transcription initiation at most promoters in human cells

7 July 2018

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

7 July 2018

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 July 2018

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The rise and fall of Hox gene clusters

7 July 2018

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PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex

7 July 2018

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The polycomb group protein Suz12 is required for embryonic stem cell differentiation

7 July 2018

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Chromatin organization and differentiation in embryonic stem cell models

7 July 2018

1 reference

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Chromatin modifications and their function

7 July 2018

1 reference

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 July 2018

1 reference

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Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

7 July 2018

1 reference

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Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030330

Genomic evolution of Hox gene clusters

7 July 2018

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JmjC-domain-containing proteins and histone demethylation

7 July 2018

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

7 July 2018

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Control of developmental regulators by Polycomb in human embryonic stem cells

7 July 2018

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Polycomb complexes repress developmental regulators in murine embryonic stem cells

7 July 2018

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Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions

7 July 2018

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Modulating Hox gene functions during animal body patterning

7 July 2018

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The genesis and evolution of homeobox gene clusters

7 July 2018

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Transcriptional co-operativity between distant retinoic acid response elements in regulation of Cyp26A1 inducibility

7 July 2018

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A high-resolution map of active promoters in the human genome

7 July 2018

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Interchromosomal associations between alternatively expressed loci

7 July 2018

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Differences in gene expression between wild type and Hoxa1 knockout embryonic stem cells after retinoic acid treatment or leukemia inhibitory factor (LIF) removal

7 July 2018

1 reference

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Roles of JUMONJI in mouse embryonic development

7 July 2018

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Suz12 is essential for mouse development and for EZH2 histone methyltransferase activity

7 July 2018

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Active genes dynamically colocalize to shared sites of ongoing transcription

7 July 2018

1 reference

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SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex

7 July 2018

1 reference

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Form follows function: The genomic organization of cellular differentiation

7 July 2018

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Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

7 July 2018

1 reference

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Hox cluster polarity in early transcriptional availability: a high order regulatory level of clustered Hox genes in the mouse

7 July 2018

1 reference

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Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability

7 July 2018

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Translating the Histone Code

7 July 2018

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Nuclear receptors coordinate the activities of chromatin remodeling complexes and coactivators to facilitate initiation of transcription.

7 July 2018

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Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

7 July 2018

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Cytochrome P450RAI(CYP26) promoter: a distinct composite retinoic acid response element underlies the complex regulation of retinoic acid metabolism

7 July 2018

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Roles of Hoxa1 and Hoxa2 in patterning the early hindbrain of the mouse

7 July 2018

1 reference

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A conserved retinoic acid responsive element in the murine Hoxb-1 gene is required for expression in the developing gut.

7 July 2018

1 reference

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Genetic interactions between Hoxa1 and Hoxb1 reveal new roles in regulation of early hindbrain patterning

7 July 2018

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An evolutionary conserved element is essential for somite and adjacent mesenchymal expression of theHoxa1 gene

7 July 2018

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Role of the retinoic acid receptor beta (RARbeta) during mouse development

7 July 2018

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In vivo functional analysis of the Hoxa-1 3' retinoic acid response element (3'RARE).

7 July 2018

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Retinoic acid-responsive enhancers located 3' of the Hox A and Hox B homeobox gene clusters. Functional analysis

7 July 2018

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An analysis of retinoic acid-induced gene expression and metabolism in AB1 embryonic stem cells

7 July 2018

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Function of retinoic acid receptor gamma in the mouse

7 July 2018

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Identification of a retinoic acid response element upstream of the murine Hox-4.2 gene

7 July 2018

1 reference

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Colinearity and functional hierarchy among genes of the homeotic complexes

7 July 2018

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Strain difference in establishment of mouse embryonic stem (ES) cell lines

7 July 2018

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Evolutionary-conserved enhancers direct region-specific expression of the murine Hoxa-1 and Hoxa-2 loci in both mice and Drosophila.

7 July 2018

1 reference

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The roles of retinoids in vertebrate development

7 July 2018

1 reference

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HOX gene activation by retinoic acid

7 July 2018

1 reference

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Identification of a retinoic acid responsive enhancer 3' of the murine homeobox gene Hox-1.6

7 July 2018

1 reference

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Retinoic acid and homeobox gene regulation.

7 July 2018

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BMP and Wnt specify hematopoietic fate by activation of the Cdx-Hox pathway

21 January 2018

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Opinion: antibody-based therapies for malaria

21 January 2018

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A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1.

21 January 2018

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The direct context of a hox retinoic acid response element is crucial for its activity.

21 January 2018

1 reference

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Expression of Hoxa2 in rhombomere 4 is regulated by a conserved cross-regulatory mechanism dependent upon Hoxb1.

21 January 2018

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Neuronal defects in the hindbrain of Hoxa1, Hoxb1 and Hoxb2 mutants reflect regulatory interactions among these Hox genes

21 January 2018

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Reversal of Hox1 gene subfunctionalization in the mouse

21 January 2018

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Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.157545

Overlapping roles of the methylated DNA-binding protein MBD1 and polycomb group proteins in transcriptional repression of HOXA genes and heterochromatin foci formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.157545

The trithorax-group protein Lid is a histone H3 trimethyl-Lys4 demethylase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.157545

Cytochrome P450RAI(CYP26) Promoter: A Distinct Composite Retinoic Acid Response Element Underlies the Complex Regulation of Retinoic Acid Metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.157545

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M110.157545

Analysis of two distinct retinoic acid response elements in the homeobox gene Hoxb1 in transgenic mice

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030330

Hoxa1 and Hoxb1 synergize in patterning the hindbrain, cranial nerves and second pharyngeal arch

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3030330

A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21087926

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ectopic Hoxa-1 induces rhombomere transformation in mouse hindbrain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21087926

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M110.157545

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

21087926

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21087926%20AND%20SRC:MED&resulttype=core&format=json