Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations (Q34439376)

25314969

2 August 2017

title

Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations (English)

1 reference

2 August 2017

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6 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25314969%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25314969%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Nicholas P Harberd

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6 June 2020

Caifu Jiang

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25314969%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Aziz Mithani

series ordinal

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6 June 2020

publication date

14 October 2014

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2 August 2017

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6 June 2020

volume

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issue

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page(s)

1821-1829

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The yeast environmental stress response regulates mutagenesis induced by proteotoxic stress

6 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Plants regenerated from tissue culture contain stable epigenome changes in rice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon-intron structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Analysing and interpreting DNA methylation data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Temperature, stress and spontaneous mutation in Caenorhabditis briggsae and Caenorhabditis elegans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Widespread dynamic DNA methylation in response to biotic stress

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Epigenetic and epigenomic variation in Arabidopsis thaliana.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Transgenerational epigenetic instability is a source of novel methylation variants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Evolution of the mutation rate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Histone methylation in higher plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Principles and challenges of genomewide DNA methylation analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Epigenetic regulation of stress responses in plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Mechanisms of salinity tolerance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

6 July 2018

Population epigenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Increased transmission of mutations by low-condition females: evidence for condition-dependent DNA repair

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Mutation rate variation in multicellular eukaryotes: causes and consequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Regulation of DNA repair in hypoxic cancer cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Timescales of genetic and epigenetic inheritance

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Abiotic stress, the field environment and stress combination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Gardening the genome: DNA methylation in Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

PLANT CELLULAR AND MOLECULAR RESPONSES TO HIGH SALINITY.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Arabidopsis MET1 cytosine methyltransferase mutants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

A globally coherent fingerprint of climate change impacts across natural systems

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Salt and drought stress signal transduction in plants

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

AtHKT1 is a salt tolerance determinant that controls Na(+) entry into plant roots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Climate extremes: observations, modeling, and impacts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Hypermethylated SUPERMAN Epigenetic Alleles in Arabidopsis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4216923

Identity and function of a large gene network underlying mutagenic repair of DNA breaks

6 July 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Stress-induced mutagenesis in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

ROS-mediated vascular homeostatic control of root-to-shoot soil Na delivery in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

An Arabidopsis soil-salinity-tolerance mutation confers ethylene-mediated enhancement of sodium/potassium homeostasis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Next-generation genetics in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

A rice quantitative trait locus for salt tolerance encodes a sodium transporter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Patterns of population epigenomic diversity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Male-biased fitness effects of spontaneous mutations in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FGR.177659.114

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25314969

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ubiquitin-specific protease16 modulates salt tolerance in Arabidopsis by regulating Na(+)/H(+) antiport activity and serine hydroxymethyltransferase stability

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25314969

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.177659.114

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6 June 2020

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6 June 2020

25314969

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