Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus (Q34399488)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20978102%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

title

Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus (English)

1 reference

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14 January 2020

main subject

Sulfolobus islandicus

object named as

Sulfolobus islandicus

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20978102%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

1 reference

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14 January 2020

Samuel H Vohr

1 reference

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14 January 2020

Philip J Hatcher

series ordinal

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14 January 2020

publication date

26 October 2010

1 reference

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Genome Biology and Evolution

14 January 2020

published in

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14 January 2020

volume

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14 January 2020

page(s)

859-869

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Replication-biased genome organisation in the crenarchaeon Sulfolobus

14 January 2020

cites work

1 reference

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Multiple replication origins of Halobacterium sp. strain NRC-1: properties of the conserved orc7-dependent oriC1.

6 July 2018

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Biogeography of the Sulfolobus islandicus pan-genome

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Archaeal DNA replication and repair

6 July 2018

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Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity

6 July 2018

1 reference

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Identification of replication origins in archaeal genomes based on the Z-curve method

6 July 2018

1 reference

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6 July 2018

1 reference

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Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

6 July 2018

1 reference

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Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Codon usage between genomes is constrained by genome-wide mutational processes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

6 July 2018

1 reference

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Neutral mutations and neutral substitutions in bacterial genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Asymmetric directional mutation pressures in bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Gene location and bacterial sequence divergence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Making sense of eukaryotic DNA replication origins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

The evolution of isochores

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Replication orientation affects the rate and direction of bacterial gene evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Analyzing genomes with cumulative skew diagrams

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Strand compositional asymmetry in bacterial and large viral genomes

6 July 2018

1 reference

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Archaeal Genomics: An Overview

6 July 2018

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Common structural features of replication origins in all life forms

6 July 2018

1 reference

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Asymmetric substitution patterns in the two DNA strands of bacteria

6 July 2018

1 reference

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The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias

6 July 2018

1 reference

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Mutation rates differ among regions of the mammalian genome

6 July 2018

1 reference

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Chromosomal location and evolutionary rate variation in enterobacterial genes

6 July 2018

1 reference

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Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand

6 July 2018

1 reference

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Predicting gene expression level from codon usage bias.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Identification of replication origins in the genome of the methanogenic archaeon, Methanocaldococcus jannaschii

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Multiple replication origins of the archaeon Halobacterium species NRC-1.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Skewed oligomers and origins of replication.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3000693

Universal replication biases in bacteria

9 December 2018

1 reference

12 December 2020

Bacterial Mode of Replication with Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon

1 reference

12 December 2020

Mathematics vs. Evolution: Mathematical Evolutionary Theory

1 reference

12 December 2020

Transcription-coupled DNA repair

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVQ068

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20978102%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20978102%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

PubMed publication ID

20978102

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20978102%20AND%20SRC:MED&resulttype=core&format=json