Recovering physical potentials from a model protein databank (Q34358926)

1 August 2017

title

Recovering physical potentials from a model protein databank (English)

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1 August 2017

J W Mullinax

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1 August 2017

W G Noid

series ordinal

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1 August 2017

language of work or name

English

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publication date

1 November 2010

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Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

published in

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1 August 2017

volume

107

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1 August 2017

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1 August 2017

page(s)

19867-19872

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Reference state for the generalized Yvon–Born–Green theory: Application for coarse-grained model of hydrophobic hydration

1 August 2017

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

6 July 2018

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6 July 2018

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The nature of folded states of globular proteins

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Deciphering the kinetic mechanism of spontaneous self-assembly of icosahedral capsids

6 July 2018

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Statistical potentials extracted from protein structures: how accurate are they?

21 January 2018

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Generalized Yvon-Born-Green theory for molecular systems

21 January 2018

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Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.1006428107

Knowledge-based scoring function to predict protein-ligand interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1006428107

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.1006428107

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.1006428107

GROMACS 3.0: a package for molecular simulation and trajectory analysis

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.1006428107

Multiscale coarse graining of liquid-state systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1006428107

Maximum Entropy Approach for Deducing Amino Acid Interactions in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1006428107

Derivation of protein-specific pair potentials based on weak sequence fragment similarity

21 January 2018

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The histidyl residues in ribonuclease-S. Photooxidation in solution and in single crystals; the iodination of histidine-12

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The frequency of ion-pair substructures in proteins is quantitatively related to electrostatic potential: a statistical model for nonbonded interactions

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Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein

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Extracting contact energies from protein structures: a study using a simplified model

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Another look at the conditions for the extraction of protein knowledge-based potentials

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Identifiers

DOI

10.1073/PNAS.1006428107

1 reference

1 August 2017

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1 August 2017

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