Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks (Q34342703)

1 August 2017

title

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks (English)

1 reference

protein-protein interaction

1 August 2017

main subject

1 reference

Fang-Xiang Wu

1 reference

ORCID Public Data File 2021

Jianxin Wang

object named as

Jianxin Wang

1 reference

1 August 2017

Wei Peng

1 reference

1 August 2017

Weiping Wang

1 reference

1 August 2017

Qing Liu

1 reference

1 August 2017

Yi Pan

1 reference

1 August 2017

publication date

18 July 2012

1 reference

1 August 2017

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1 August 2017

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1 August 2017

1 reference

A methodology for detecting the orthology signal in a PPI network at a functional complex level.

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

IsoBase: a database of functionally related proteins across PPI networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Cytoscape 2.8: new features for data integration and network visualization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

OMA 2011: orthology inference among 1000 complete genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Investigating the predictability of essential genes across distantly related organisms using an integrative approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

A systems biology tour de force for a near-minimal bacterium

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

IsoRankN: spectral methods for global alignment of multiple protein networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Predicting essential genes based on network and sequence analysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Up-to-date catalogues of yeast protein complexes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Targeting virulence: a new paradigm for antimicrobial therapy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Evolutionary and physiological importance of hub proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Differences in the evolutionary history of disease genes affected by dominant or recessive mutations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Stable evolutionary signal in a yeast protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

MIPS: analysis and annotation of proteins from whole genomes in 2005.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Subgraph centrality in complex networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

High-betweenness proteins in the yeast protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Genome-wide screening for gene function using RNAi in mammalian cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Evolution and topology in the yeast protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Defining and identifying communities in networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

The COG database: an updated version includes eukaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Functional profiling of the Saccharomyces cerevisiae genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Evolutionary rate in the protein interaction network

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Lethality and centrality in protein networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

SGD: Saccharomyces Genome Database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Centers of complex networks

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1752-0509-6-87

Identification of essential proteins based on edge clustering coefficient

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Algorithms to detect multiprotein modularity conserved during evolution

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3472210

Virtual identification of essential proteins within the protein interaction network of yeast

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22808943

12 December 2020

inferred from PubMed ID database lookup

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22808943

12 December 2020

inferred from PubMed ID database lookup

An Exponential Core in the Heart of the Yeast Protein Interaction Network

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22808943

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1752-0509-6-87

1 reference

journals/bmcsb/PengW0LWP12

1 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1034819128

0 references

Fatcat ID

release_l6mgjpbbubbihcry462oalwymi

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l6mgjpbbubbihcry462oalwymi

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3472210

1 reference

1 August 2017

1 reference