Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers (Q34220430)

31 July 2017

title

Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers (English)

1 reference

31 July 2017

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Sabine Kleinsteuber

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31 July 2017

Kathleen M Schleinitz

series ordinal

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31 July 2017

Carsten Vogt

series ordinal

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31 July 2017

language of work or name

English

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publication date

4 April 2012

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Applied Microbiology and Biotechnology

31 July 2017

published in

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31 July 2017

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31 July 2017

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31 July 2017

page(s)

851-873

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Pyrosequence analysis of unamplified and whole genome amplified DNA from hydrocarbon-contaminated groundwater.

31 July 2017

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Anaerobic catabolism of aromatic compounds: a genetic and genomic view.

21 January 2018

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Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).

21 January 2018

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Phylogeny of acetate-utilizing microorganisms in soils along a nutrient gradient in the Florida Everglades

21 January 2018

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When metagenomics meets stable-isotope probing: progress and perspectives

21 January 2018

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Environmental genomics reveals a single-species ecosystem deep within Earth

21 January 2018

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Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas

21 January 2018

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The use of nucleic acid based stable isotope probing to identify the microorganisms responsible for anaerobic benzene and toluene biodegradation

21 January 2018

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Enhanced anaerobic biodegradation of benzene-toluene-ethylbenzene-xylene-ethanol mixtures in bioaugmented aquifer columns

21 January 2018

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Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment

21 January 2018

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Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification

21 January 2018

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Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences

21 January 2018

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Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments.

21 January 2018

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Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil

21 January 2018

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Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

21 January 2018

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Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospects

21 January 2018

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The contribution of 'omic'-based approaches to the study of enhanced biological phosphorus removal microbiology.

21 January 2018

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Methanogenic toluene metabolism: community structure and intermediates

21 January 2018

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Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes

21 January 2018

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Microbial degradation of aromatic compounds - from one strategy to four

21 January 2018

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Detection of 2,4,6-trinitrotoluene-utilizing anaerobic bacteria by 15N and 13C incorporation

21 January 2018

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

21 January 2018

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Microbial metagenomics: beyond the genome

21 January 2018

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Phylogenetic diversity and metagenomics of candidate division OP3.

21 January 2018

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Microbial biodiversity in groundwater ecosystems

21 January 2018

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Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1.

21 January 2018

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Discovery and characterization of a new bacterial candidate division by an anaerobic sludge digester metagenomic approach

21 January 2018

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Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4',6'-diamidino-2-phenylindole) and tetracycline labeling.

21 January 2018

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Correlation of community dynamics and process parameters as a tool for the prediction of the stability of wastewater treatment

21 January 2018

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Diversity of anaerobic microorganisms involved in long-chain fatty acid degradation in methanogenic sludges as revealed by RNA-based stable isotope probing

21 January 2018

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Adding handles to unhandy substrates: anaerobic hydrocarbon activation mechanisms

21 January 2018

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Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

21 January 2018

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Dynamics of an oligotrophic bacterial aquifer community during contact with a groundwater plume contaminated with benzene, toluene, ethylbenzene, and xylenes: an in situ mesocosm study

21 January 2018

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Enrichment of anaerobic benzene-degrading microorganisms by in situ microcosms

21 January 2018

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Functional characterization of an anaerobic benzene-degrading enrichment culture by DNA stable isotope probing

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

21 January 2018

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Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus

21 January 2018

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Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

21 January 2018

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Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil

21 January 2018

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Microbiology: metagenomics

21 January 2018

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Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments

21 January 2018

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Single-cell analysis and isolation for microbiology and biotechnology: methods and applications.

21 January 2018

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Genomic sequencing of single microbial cells from environmental samples

21 January 2018

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Comparison of the Specificities and Efficacies of Primers for Aromatic Dioxygenase Gene Analysis of Environmental Samples

21 January 2018

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Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms

21 January 2018

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Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP).

21 January 2018

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Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

21 January 2018

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Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

21 January 2018

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Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Community structure of subsurface biofilms in the thermal sulfidic caves ofAcquasanta Terme, Italy

21 January 2018

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RNA-based stable isotope probing and isolation of anaerobic benzene-degrading bacteria from gasoline-contaminated groundwater

21 January 2018

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Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Phase preference by active, acetate-utilizing bacteria at the rifle, CO integrated field research challenge site.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Anaerobic naphthalene degradation by Gram-positive, iron-reducing bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Molecular characterization of bacterial communities mineralizing benzene under sulfate-reducing conditions

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

The genome of Pelotomaculum thermopropionicum reveals niche-associated evolution in anaerobic microbiota.

21 January 2018

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The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation

21 January 2018

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Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons

21 January 2018

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Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases

21 January 2018

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6-Oxocyclohex-1-ene-1-carbonyl-coenzyme A hydrolases from obligately anaerobic bacteria: characterization and identification of its gene as a functional marker for aromatic compounds degrading anaerobes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Combined application of PCR-based functional assays for the detection of aromatic-compound-degrading anaerobes.

21 January 2018

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Single-cell genomic sequencing using Multiple Displacement Amplification

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Insights into networks of functional microbes catalysing methanization of cellulose under mesophilic conditions

21 January 2018

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Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment

21 January 2018

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Soil-specific limitations for access and analysis of soil microbial communities by metagenomics

21 January 2018

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The bzd gene cluster, coding for anaerobic benzoate catabolism, in Azoarcus sp. strain CIB

21 January 2018

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Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Comparison of rRNA and polar-lipid-derived fatty acid biomarkers for assessment of 13C-substrate incorporation by microorganisms in marine sediments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

The use of stable isotope probing techniques in bioreactor and field studies on bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Isotopic evidence suggests different initial reaction mechanisms for anaerobic benzene biodegradation

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Syntrophy in anaerobic global carbon cycles

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Anaerobic degradation of non-substituted aromatic hydrocarbons

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Linking bacterial identities and ecosystem processes: can 'omic' analyses be more than the sum of their parts?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Syntrophus buswellii gen. nov., sp. nov.: a Benzoate Catabolizer from Methanogenic Ecosystems

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Functional single-cell analyses: flow cytometry and cell sorting of microbial populations and communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Community dynamics within a bacterial consortium during growth on toluene under sulfate-reducing conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Anaerobic degradation of naphthalene and 2-methylnaphthalene by strains of marine sulfate-reducing bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Methodological considerations for the use of stable isotope probing in microbial ecology

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Who eats what, where and when? Isotope-labelling experiments are coming of age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Identification of critical members in a sulfidogenic benzene-degrading consortium by DNA stable isotope probing.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Host cell-free growth of the Q fever bacterium Coxiella burnetii

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Methods for unveiling cryptic microbial partnerships in nature

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Census of the viral metagenome within an activated sludge microbial assemblage

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Utilization of microbial biofilms as monitors of bioremediation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

"Candidatus Cloacamonas acidaminovorans": genome sequence reconstruction provides a first glimpse of a new bacterial division

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Electron acceptor-dependent identification of key anaerobic toluene degraders at a tar-oil-contaminated aquifer by Pyro-SIP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metabolic flexibility of sulfate-reducing bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Diversity of uncultured Epsilonproteobacteria from terrestrial sulfidic caves and springs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Pelotomaculum terephthalicum sp. nov. and Pelotomaculum isophthalicum sp. nov.: two anaerobic bacteria that degrade phthalate isomers in syntrophic association with hydrogenotrophic methanogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Functional genomics of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Effects of hydrogen and acetate on benzene mineralisation under sulphate-reducing conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Whole genome amplification and de novo assembly of single bacterial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Syntrophic acetate oxidation under thermophilic methanogenic condition in Chinese paddy field soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Identification of putative benzene-degrading bacteria in methanogenic enrichment cultures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Anaerobic degradation of the aromatic hydrocarbon biphenyl by a sulfate-reducing enrichment culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Achievements and new knowledge unraveled by metagenomic approaches

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metagenomic analyses: past and future trends

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Genetic diversity of benzoyl coenzyme A reductase genes detected in denitrifying isolates and estuarine sediment communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Molecular diversity and distribution of aromatic hydrocarbon‐degrading anaerobes across a landfill leachate plume

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Microorganisms involved in anaerobic phenol degradation in the treatment of synthetic coke-oven wastewater detected by RNA stable-isotope probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Diversity of five anaerobic toluene-degrading microbial communities investigated using stable isotope probing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

The human microbiome project

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

DNA-based stable isotope probing: a link between community structure and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Physiological and molecular characterization of anaerobic benzene-degrading mixed cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Systems biology: Functional analysis of natural microbial consortia using community proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Benzene oxidation under sulfate-reducing conditions in columns simulating in situ conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Evaluation of toluene degradation pathways by two-dimensional stable isotope fractionation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Anaerobic benzene degradation by bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Past, present and future applications of flow cytometry in aquatic microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Building on basic metagenomics with complementary technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Identification and expression of benzylsuccinate synthase genes in a toluene-degrading methanogenic consortium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

A strictly anaerobic betaproteobacterium Georgfuchsia toluolica gen. nov., sp. nov. degrades aromatic compounds with Fe(III), Mn(IV) or nitrate as an electron acceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Biodegradation in contaminated aquifers: incorporating microbial/molecular methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Unlocking the 'microbial black box' using RNA-based stable isotope probing technologies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Depth-resolved quantification of anaerobic toluene degraders and aquifer microbial community patterns in distinct redox zones of a tar oil contaminant plume.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

One bacterial cell, one complete genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Subsurface cycling of nitrogen and anaerobic aromatic hydrocarbon biodegradation revealed by nucleic Acid and metabolic biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Microbial consortia involved in the anaerobic degradation of hydrocarbons

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

Petroleum hydrocarbon mineralization in anaerobic laboratory aquifer columns

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-012-4025-0

10.1007/S00253-012-4025-0

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

31 July 2017

1023195589

0 references

1 reference