Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy (Q34184032)

31 July 2017

title

Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy (English)

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31 July 2017

Jochen Felix Kepert

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31 July 2017

Katalin Fejes Tóth

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31 July 2017

Maïwen Caudron

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31 July 2017

Norbert Mücke

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31 July 2017

Jörg Langowski

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31 July 2017

Karsten Rippe

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31 July 2017

language of work or name

English

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publication date

1 December 2003

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31 July 2017

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31 July 2017

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31 July 2017

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31 July 2017

page(s)

4012-4022

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Glutaraldehyde modified mica: a new surface for atomic force microscopy of chromatin

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Role of DNA sequence in nucleosome stability and dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Asymmetries in the nucleosome core particle at 2.5 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Linker histone binding and displacement: versatile mechanism for transcriptional regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Analysis of chromatin by scanning force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

The role of histone H1 in chromatin condensation and transcriptional repression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

A method for directly fitting the time derivative of sedimentation velocity data and an alternative algorithm for calculating sedimentation coefficient distribution functions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Calculation of hydrodynamic properties of globular proteins from their atomic-level structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Histone H1 is a specific repressor of core histone acetylation in chromatin.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Preparation of nucleosome core particle from recombinant histones

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

The location of the linker histone on the nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Position and orientation of the globular domain of linker histone H5 on the nucleosome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Differential nucleosome positioning on Xenopus oocyte and somatic 5 S RNA genes determines both TFIIIA and H1 binding: a mechanism for selective H1 repression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Linker histone tails and N-tails of histone H3 are redundant: scanning force microscopy studies of reconstituted fibers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Contributions of linker histones and histone H3 to chromatin structure: scanning force microscopy studies on trypsinized fibers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Chromatin fiber structure: morphology, molecular determinants, structural transitions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Application of atomic force microscopy to visualization of DNA, chromatin, and chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Histone H1 and chromatin higher-order structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Crystal structure of the nucleosome core particle at 2.8 Å resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Histone structure and the organization of the nucleosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Visualization and analysis of chromatin by scanning force microscopy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Superhelix dimensions of a 1868 base pair plasmid determined by scanning force microscopy in air and in aqueous solution.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Nucleosome packaging and nucleosome positioning of genomic DNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Scanning force microscopy reveals ellipsoid shape of chicken erythrocyte nucleosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

What determines the folding of the chromatin fiber?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

The linker histones and chromatin structure: new twists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

DNA binding to mica correlates with cationic radius: assay by atomic force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Linker histone-dependent DNA structure in linear mononucleosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Evidence of DNA bending in transcription complexes imaged by scanning force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Atomic force microscope measurements of nucleosome cores assembled along defined DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Histone H1 is located in the interior of the chromatin 30-nm filament.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Probing chromatin with the scanning force microscope

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Linker histones H1 and H5 prevent the mobility of positioned nucleosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Scanning force microscopy of chromatin.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Nucleosome dissociation at physiological ionic strengths

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Calibration of DNA curvature and a unified description of sequence-directed bending

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Chromatosome positioning on assembled long chromatin. Linker histones affect nucleosome placement on 5 S rDNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Energetics and affinity of the histone octamer for defined DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Sequence-specific recognition of DNA in the nucleosome by pyrrole-imidazole polyamides

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Accurate length determination of DNA molecules visualized by atomic force microscopy: evidence for a partial B- to A-form transition on mica

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303702

Nucleosome core particle stability and conformational change. Effect of temperature, particle and NaCl concentrations, and crosslinking of histone H3 sulfhydryl groups

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Nucleosomal Arrays Can Be Salt-Reconstituted on a Single-Copy MMTV Promoter DNA Template: Their Properties Differ in Several Ways from Those of Comparable 5S Concatameric Arrays

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Population analysis of subsaturated 172-12 nucleosomal arrays by atomic force microscopy detects nonrandom behavior that is favored by histone acetylation and short repeat length

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

DNA at the entry-exit of the nucleosome observed by cryoelectron microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Characterization of nucleosome core particles containing histone proteins made in bacteria

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Visualization of Nucleosomal Substructure in Native Chromatin by Atomic Force Microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Binding of ethidium to the nucleosome core particle. 2. Internal and external binding modes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Scanning force microscopy of Escherichia coli RNA polymerase.sigma54 holoenzyme complexes with DNA in buffer and in air

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Sedimentation velocity spins a new weave for an old fabric

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Chromatin organization re-viewed

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Role of linker histones in extended chromatin fibre structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Evidence for nonrandom behavior in 208-12 subsaturated nucleosomal array populations analyzed by AFM

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

Mapping nucleosome locations on the 208-12 by AFM provides clear evidence for cooperativity in array occupation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974815-2

10.1016/S0006-3495(03)74815-2

7 January 2021

Identifiers

DOI

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Fatcat

https://api.fatcat.wiki/v0/release/iranhrucr5fuxo4a2wwkpfmgn4

30 July 2022

release_iranhrucr5fuxo4a2wwkpfmgn4

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Fatcat

https://api.fatcat.wiki/v0/release/iranhrucr5fuxo4a2wwkpfmgn4

30 July 2022

https://api.fatcat.wiki/v0/release/iranhrucr5fuxo4a2wwkpfmgn4

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30 July 2022

https://api.fatcat.wiki/v0/release/iranhrucr5fuxo4a2wwkpfmgn4

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30 July 2022