NGS QC Toolkit: a toolkit for quality control of next generation sequencing data (Q34152647)

31 July 2017

title

NGS QC Toolkit: a toolkit for quality control of next generation sequencing data (English)

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31 July 2017

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Ravi K Patel

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Mukesh Jain

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31 July 2017

language of work or name

English

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publication date

1 February 2012

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31 July 2017

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31 July 2017

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31 July 2017

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31 July 2017

page(s)

e30619

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Creative Commons Attribution 4.0 International

31 July 2017

start time

1 February 2012

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April 2022 Public Data File from Crossref

copyrighted

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cites work

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

Quality control and preprocessing of metagenomic datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

Manipulation of FASTQ data with Galaxy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

TagDust--a program to eliminate artifacts from next generation sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

Next-generation DNA sequencing methods

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

Genome sequencing in microfabricated high-density picolitre reactors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3270013

10.1371/JOURNAL.PONE.0030619

5 July 2018

Identifiers

DOI

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31 July 2017

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31 July 2017

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