Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes (Q34146212)

31 July 2017

title

Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes (English)

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31 July 2017

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Michael Lee Salmans

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31 July 2017

Shu-Miaw Chaw

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31 July 2017

Ching-Ping Lin

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31 July 2017

Arthur Chun-Chieh Shih

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31 July 2017

Yu-Wei Wu

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31 July 2017

R Michael Mulligan

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31 July 2017

publication date

9 July 2010

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31 July 2017

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31 July 2017

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31 July 2017

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31 July 2017

page(s)

439-446

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The plant tree of life: an overview and some points of view

31 July 2017

cites work

1 reference

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Characteristics and prediction of RNA editing sites in transcripts of the Moss Takakia lepidozioides chloroplast

5 July 2018

1 reference

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The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Two RNA editing sites with cis-acting elements of moderate sequence identity are recognized by an identical site-recognition protein in tobacco chloroplasts

5 July 2018

1 reference

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RNA editing in plant organelles: machinery, physiological function and evolution

5 July 2018

1 reference

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The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.

5 July 2018

1 reference

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PREP-Mt: predictive RNA editor for plant mitochondrial genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Complex cis-elements determine an RNA editing site in pea mitochondria

5 July 2018

1 reference

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The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Complete Nucleotide Sequence of the Chloroplast Genome from a Leptosporangiate Fern, Adiantum capillus-veneris L

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

RNA editing in hornwort chloroplasts makes more than half the genes functional

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants

5 July 2018

1 reference

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The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants

5 July 2018

1 reference

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Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements

5 July 2018

1 reference

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The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

High conservation of a 5' element required for RNA editing of a C target in chloroplast psbE transcripts

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Computational analysis of RNA editing sites in plant mitochondrial genomes reveals similar information content and a sporadic distribution of editing sites

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

RNA editing sites in plant mitochondria can share cis-elements

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2943580

The evolution of chloroplast RNA editing

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20617318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comparative analysis of RNA editing sites in higher plant chloroplasts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20617318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00294-010-0312-4

1 reference

Dimensions Publication ID

31 July 2017

1007760559

0 references

Fatcat ID

release_viwnst5w4ra47d3wveqjyyg4oq

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/viwnst5w4ra47d3wveqjyyg4oq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

2943580

1 reference

31 July 2017

1 reference