Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. (Q34035611)

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10 November 2019

review article

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title

Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms (English)

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10 November 2019

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10 November 2019

U B Göbel

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10 November 2019

publication date

1 July 2000

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Journal of Microbiological Methods

10 November 2019

published in

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10 November 2019

volume

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10 November 2019

issue

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10 November 2019

page(s)

85-112

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Autofluorescence of Live Purple Bacteria in the Near Infrared

10 November 2019

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Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization

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Evaluation of fluorochromes for flow cytometric detection of Cryptosporidium parvum oocysts labelled by fluorescent in situ hybridization

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Response of marine bacterioplankton to differential filtration and confinement

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Haemophilus influenzae resides and multiplies intracellularly in human adenoid tissue as demonstrated by in situ hybridization and bacterial viability assay

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Persistence of Nontypeable Haemophilus influenzae in Adenoid Macrophages: A Putative Colonization Mechanism

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Differential sensitivity of 16S rRNA targeted oligonucleotide probes used for fluorescence in situ hybridization is a result of ribosomal higher order structure

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7 January 2021

Detection of Anaplasma marginale DNA in bovine erythrocytes by slot-blot and in situ hybridization with a PCR-mediated digoxigenin-labeled DNA probe

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7 January 2021

Specific in situ hybridization of the intracellular organism of porcine proliferative enteropathy.

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Identification of Bacteroides forsythus in subgingival plaque from patients with advanced periodontitis

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Fluorescence in situ hybridization for direct visualization of Gram-negative anaerobes in subgingival plaque samples

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Applications of laser scanning microscopy for analysis of aquatic microhabitats

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Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells

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[Qualitative and quantitative studies of autofluorescence in fungi]

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Fungal Autofluorescence with Ultraviolet Illumination

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Specific detection of Legionella pneumophila: construction of a new 16S rRNA-targeted oligonucleotide probe

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Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria

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Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods

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Development and validation of an automated, microscopy-based method for enumeration of groups of intestinal bacteria

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Scanning electron microscopy and fluorescent in situ hybridization of experimental Brachyspira (Serpulina) pilosicoli infection in growing pigs

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7 January 2021

RNA-DNA Hybrids at the Cytological Level

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Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing

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7 January 2021

Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system

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7 January 2021

Detection of Helicobacter pylori in paraffin-embedded gastric biopsy specimens by in situ hybridization

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7 January 2021

Estimating the growth rate of slowly growing marine bacteria from RNA content

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7 January 2021

Fluorescent In situ hybridization allows rapid identification of microorganisms in blood cultures

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rRNA-targeted fluorescent in situ hybridization analysis of bacterial community structure in river water

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7 January 2021

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Quantitative fluorescence in situ hybridization of Aureobasidium pullulans on microscope slides and leaf surfaces

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Improved microscopic identification of Clavibacter michiganensis subsp. sepedonicus cells by combining in situ hybridization with immunofluorescence

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7 January 2021

Specific detection of Candida albicans and Candida tropicalis by fluorescent in situ hybridization with an 18S rRNA-targeted oligonucleotide probe

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7 January 2021

Permeabilization of mycolic-acid-containing actinomycetes for in situ hybridization with fluorescently labelled oligonucleotide probes.

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7 January 2021

The RDP (Ribosomal Database Project) continues

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7 January 2021

In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes.

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7 January 2021

In situ identification of Legionellaceae using 16S rRNA-targeted oligonucleotide probes and confocal laser scanning microscopy

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7 January 2021

Widefield deconvolution epifluorescence microscopy combined with fluorescence in situ hybridization reveals the spatial arrangement of bacteria in sponge tissue

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The diagnostic value of fungal autofluorescence

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In situ gene expression in mixed-culture biofilms: evidence of metabolic interactions between community members

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Natural fluorescence of white blood cells: spectroscopic and imaging study

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Molecular epidemiology of oral treponemes associated with periodontal disease

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Fluorescence in situ hybridization shows spatial distribution of as yet uncultured treponemes in biopsies from digital dermatitis lesions

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Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms

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In situ localisation of Yersinia enterocolitica by catalysed reported deposition signal amplification

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Molecular hybridization of radioactive DNA to the DNA of cytological preparations

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7 January 2021

Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization

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7 January 2021

Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocations of chromosome 4.

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7 January 2021

Use of PNA oligonucleotides for the in situ detection of Escherichia coli in water

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7 January 2021

Combined fluorescent in situ hybridisation and immunolabelling of Bacteroides fragilis

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Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column

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7 January 2021

Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems

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7 January 2021

Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes

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7 January 2021

In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides

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7 January 2021

Detection of Mycoplasma pneumoniae-DNA within diseased gingiva by in situ hybridization using a biotin-labeled probe

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7 January 2021

Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms

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Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor

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7 January 2021

On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge

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7 January 2021

In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes

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Phylogenetic diversity of symbiotic methanogens living in the hindgut of the lower termite Reticulitermes speratus analyzed by PCR and in situ hybridization

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Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge

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7 January 2021

Whole-cell hybridization of Methanosarcina cells with two new oligonucleotide probes

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7 January 2021

Quantitative imaging and statistical analysis of fluorescence in situ hybridization (FISH) of Aureobasidium pullulans

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Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of Paramecium caudatum

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Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats

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Resuscitation of viable but nonculturable Legionella pneumophila Philadelphia JR32 by Acanthamoeba castellanii

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Autofluorescence correction for fluorescence in situ hybridization

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Detection of Chlamydia in formalin-fixed and paraffin-embedded avian tissue by in situ hybridization. A comparison between in situ hybridization and peroxidase-antiperoxidase labelling.

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7 January 2021

Elimination of autofluorescence in immunofluorescence microscopy with digital image processing

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7 January 2021

The European small subunit ribosomal RNA database

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7 January 2021

Evaluation of fluorochromes and excitation sources for immunofluorescence in water samples

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7 January 2021

In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes

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7 January 2021

Optimizing fluorescent in situ hybridization with rRNA‐targeted oligonucleotide probes for flow cytometric identification of microorganisms

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7 January 2021

Flow sorting of microorganisms for molecular analysis

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7 January 2021

Use of methacrylate De-embedding protocols for in situ hybridization on semithin plastic sections with multiple detection strategies

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7 January 2021

16S ribosomal DNA amplification for phylogenetic study

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7 January 2021

Which fluorophore is brightest? A comparison of the staining obtained using fluorescein, tetramethylrhodamine, lissamine rhodamine, Texas red, and cyanine 3.18

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7 January 2021

Problems associated with identification of Legionella species from the environment and isolation of six possible new species

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7 January 2021

Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides

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7 January 2021

Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material

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7 January 2021

https://opencitations.net/index/coci/api/v1/citations/10.1128/MR.51.2.221-271.1987

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18 October 2022

Identifiers

DOI

10.1016/S0167-7012(00)00152-4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10991623%20AND%20SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10991623%20AND%20SRC:MED&resulttype=core&format=json