Methods for high-density admixture mapping of disease genes (Q22337164)

7 February 2023

Nick Patterson

Nick

Patterson

1 reference

7 February 2023

David Reich

David

Reich

1 reference

7 February 2023

Mark J Daly

Mark J

Daly

1 reference

7 February 2023

David A Hafler

David A

Hafler

1 reference

7 February 2023

Jorge R Oksenberg

Jorge R

Oksenberg

1 reference

7 February 2023

Stephen L Hauser

Stephen L

Hauser

1 reference

7 February 2023

Kirk E Lohmueller

Kirk E

Lohmueller

1 reference

7 February 2023

Stephen J

O'Brien

Stephen J O'Brien

1 reference

7 February 2023

Neil Hattangadi

Neil

Hattangadi

1 reference

7 February 2023

Barton Lane

series ordinal

author given names

Barton

author last names

Lane

1 reference

7 February 2023

Michael W Smith

series ordinal

author given names

Michael W

author last names

Smith

1 reference

American Journal of Human Genetics

7 February 2023

language of work or name

English

0 references

publication date

May 2004

0 references

published in

0 references

volume

0 references

issue

0 references

page(s)

979-1000

0 references

cites work

A High-Density Admixture Map for Disease Gene Discovery in African Americans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Mapping multiple sclerosis susceptibility to the HLA-DR locus in African Americans

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Control of confounding of genetic associations in stratified populations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

The common PPARgamma Pro12Ala polymorphism is associated with decreased risk of type 2 diabetes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Consistent long-range linkage disequilibrium generated by admixture in a Bantu-Semitic hybrid population

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

A comprehensive review of genetic association studies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Searching for genetic determinants in the new millennium

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

The structure of haplotype blocks in the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Sporadic--but not variant--Creutzfeldt-Jakob disease is associated with polymorphisms upstream of PRNP exon 1.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Effects of age, sex, and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease. A meta-analysis. APOE and Alzheimer Disease Meta Analysis Consortium

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Common west African HLA antigens are associated with protection from severe malaria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Genomic control for association studies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

The future of genetic studies of complex human diseases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Genetic dissection of complex traits: guidelines for interpreting and reporting linkage results

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Estimating African American admixture proportions by use of population-specific alleles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Measuring and using admixture to study the genetics of complex diseases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Multiple sclerosis in US veterans of the Vietnam era and later military service: race, sex, and geography

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Prion susceptibility and protective alleles exhibit marked geographic differences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

IBD5 is a general risk factor for inflammatory bowel disease: replication of association with Crohn disease and identification of a novel association with ulcerative colitis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Skin pigmentation, biogeographical ancestry and admixture mapping

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

HLA-DR2 dose effect on susceptibility to multiple sclerosis and influence on disease course

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Nucleotide diversity and haplotype structure of the human angiotensinogen gene in two populations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Estimation of admixture and detection of linkage in admixed populations by a Bayesian approach: application to African-American populations

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Worldwide ethnic distribution of the G protein beta3 subunit 825T allele and its association with obesity in Caucasian, Chinese, and Black African individuals.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Mapping by admixture linkage disequilibrium in human populations: limits and guidelines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

World distribution of factor V Leiden

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Construction of multilocus genetic linkage maps in humans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Insulin gene in diabetes. Analysis through RFLP.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Mortality differences between black and white men in the USA: contribution of income and other risk factors among men screened for the MRFIT. MRFIT Research Group. Multiple Risk Factor Intervention Trial

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Evaluation of Likelihood Ratios for Complex Genetic Models

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Epidemiology of multiple sclerosis in U.S. veterans: 1. Race, sex, and geographic distribution

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Markers informative for ancestry demonstrate consistent megabase-length linkage disequilibrium in the African American population

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Association of Multidrug Resistance in Epilepsy with a Polymorphism in the Drug-Transporter GeneABCB1

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

High-resolution haplotype structure in the human genome

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Association of a novel point mutation (C159G) of the CTLA4 gene with type 1 diabetes in West Africans but not in Chinese

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

A Bayesian hierarchical model for allele frequencies.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Apolipoprotein E (APOE) allele distribution in the world. Is APOE*4 a 'thrifty' allele?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

CTLA4 alanine-17 confers genetic susceptibility to Graves' disease and to type 1 diabetes mellitus.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

BalI and MspI polymorphisms of the dopamine D3 receptor gene in African Blacks and Caucasians.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Polymorphisms of renin-angiotensin genes among Nigerians, Jamaicans, and African Americans

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Linkage disequilibrium in admixed populations: applications in gene mapping

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1181990

Variations on a theme: cataloging human DNA sequence variation

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/15088269

12 December 2020

inferred from PubMed ID database lookup

Multipoint linkage disequilibrium mapping with particular reference to the African-American population

1 reference

https://pubmed.ncbi.nlm.nih.gov/15088269

12 December 2020

inferred from PubMed ID database lookup

High risk of thrombosis in patients homozygous for factor V Leiden (activated protein C resistance)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15088269

12 December 2020

inferred from PubMed ID database lookup

A tutorial on hidden Markov models and selected applications in speech recognition

1 reference

7 January 2021

Assessing population differentiation and isolation from single-nucleotide polymorphism data

1 reference

7 January 2021

A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains

1 reference

7 January 2021

Adaptive Rejection Sampling for Gibbs Sampling

1 reference

7 January 2021

Adaptive Rejection Metropolis Sampling within Gibbs Sampling

1 reference

7 January 2021

Identifiers

DOI

10.1086/420871

1 reference

1 reference

1 reference

1 reference