Genome structure of the legume, Lotus japonicus (Q22066059)

7 February 2023

Shusei Sato

Shusei

Sato

1 reference

7 February 2023

Yasukazu Nakamura

Yasukazu

Nakamura

1 reference

7 February 2023

Takakazu Kaneko

Takakazu

Kaneko

1 reference

7 February 2023

Erika Asamizu

Erika

Asamizu

1 reference

7 February 2023

Tomohiko Kato

Tomohiko

Kato

1 reference

7 February 2023

Mitsuteru Nakao

Mitsuteru

Nakao

1 reference

7 February 2023

Shigemi Sasamoto

Shigemi

Sasamoto

1 reference

7 February 2023

Akiko Watanabe

Akiko

Watanabe

1 reference

7 February 2023

Akiko Ono

Akiko

Ono

1 reference

7 February 2023

Kumiko Kawashima

Kumiko

Kawashima

1 reference

7 February 2023

Tsunakazu Fujishiro

Tsunakazu

Fujishiro

1 reference

7 February 2023

Midori Katoh

Midori

Katoh

1 reference

7 February 2023

Mitsuyo Kohara

Mitsuyo

Kohara

1 reference

7 February 2023

Yoshie Kishida

Yoshie

Kishida

1 reference

7 February 2023

Chiharu Minami

Chiharu

Minami

1 reference

7 February 2023

Shinobu Nakayama

Shinobu

Nakayama

1 reference

7 February 2023

Naomi Nakazaki

Naomi

Nakazaki

1 reference

7 February 2023

Yoshimi Shimizu

Yoshimi

Shimizu

1 reference

7 February 2023

Sayaka Shinpo

Sayaka

Shinpo

1 reference

7 February 2023

Chika Takahashi

Chika

Takahashi

1 reference

7 February 2023

Tsuyuko Wada

Tsuyuko

Wada

1 reference

7 February 2023

Manabu Yamada

Manabu

Yamada

1 reference

7 February 2023

Nobuko Ohmido

Nobuko

Ohmido

1 reference

7 February 2023

Makoto Hayashi

Makoto

Hayashi

1 reference

7 February 2023

Kiichi Fukui

Kiichi

Fukui

1 reference

7 February 2023

Tomoya Baba

Tomoya

Baba

1 reference

7 February 2023

Tomoko Nakamichi

Tomoko

Nakamichi

1 reference

7 February 2023

Satoshi Tabata

Satoshi

Tabata

1 reference

Antiquity of microRNAs and their targets in land plants

7 February 2023

language of work or name

English

0 references

publication date

August 2008

0 references

0 references

0 references

0 references

227-39

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

19 March 2017

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Prediction of signal recognition particle RNA genes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Gene ontology: tool for the unification of biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

GeneMark.hmm: new solutions for gene finding

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Basic local alignment search tool

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Prediction of complete gene structures in human genomic DNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Empirical analysis of transcriptional activity in the Arabidopsis genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A novel family of calmodulin-binding transcription activators in multicellular organisms

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A computational screen for methylation guide snoRNAs in yeast

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The map-based sequence of the rice genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Widespread occurrence of antisense transcription in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Automated de novo identification of repeat sequence families in sequenced genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

SOSUI: classification and secondary structure prediction system for membrane proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

New developments in the InterPro database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The Universal Protein Resource (UniProt).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

The transposable element landscape of the model legume Lotus japonicus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Pseudo-Response Regulators (PRRs) or True Oscillator Components (TOCs).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Structural analysis of a Lotus japonicus genome. V. Sequence features and mapping of sixty-four TAC clones which cover the 6.4 mb regions of the genome.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Structural analysis of a Lotus japonicus genome. IV. Sequence features and mapping of seventy-three TAC clones which cover the 7.5 mb regions of the genome.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Structural Analysis of a Lotus japonicus Genome. III. Sequence Features and Mapping of Sixty-two TAC Clones Which Cover the 6.7 Mb Regions of the Genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Two-component signal transduction pathways in Arabidopsis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Structural analysis of a Lotus japonicus genome. II. Sequence features and mapping of sixty-five TAC clones which cover the 6.5-mb regions of the genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 mb regions of the genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Plant cis-acting regulatory DNA elements (PLACE) database: 1999

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A Tool for Analyzing and Annotating Genomic Sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Prediction of locally optimal splice sites in plant pre-mRNA with applications to gene identification in Arabidopsis thaliana genomic DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Comparative genomics of rice and Arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Chromosomal map of the model legume Lotus japonicus.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Development of a quantitative pachytene chromosome map in Oryza sativa by imaging methods

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Molecular characterisation of the Arabidopsis SBP-box genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Transgenic Lotus japonicus with an ethylene receptor gene Cm-ERS1/H70A enhances formation of infection threads and nodule primordia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Comparative analysis of the receptor-like kinase family in Arabidopsis and rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Molecular evolution of lysin motif-type receptor-like kinases in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Proteome analysis. Novel proteins identified at the peribacteroid membrane from Lotus japonicus root nodules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN008

Genetics of Symbiosis inLotus japonicus: Recombinant Inbred Lines, Comparative Genetic Maps, and Map Position of 35 Symbiotic Loci

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

HAR1 mediates systemic regulation of symbiotic organ development

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Shoot control of root development and nodulation is mediated by a receptor-like kinase.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

A plant receptor-like kinase required for both bacterial and fungal symbiosis.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

Water-selective and multifunctional aquaporins from Lotus japonicus nodules

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575887

29 November 2018

1 reference

12 December 2020

Exploitation of colinear relationships between the genomes of Lotus japonicus, Pisum sativum and Arabidopsis thaliana, for positional cloning of a legume symbiosis gene

1 reference

12 December 2020

Construction of a Genetic Linkage Map of the Model Legume Lotus japonicus Using an Intraspecific F2 Population

1 reference

12 December 2020

The ARF family of transcription factors and their role in plant hormone-responsive transcription

1 reference

12 December 2020

A SINE family widely distributed in the plant kingdom and its evolutionary history

1 reference

12 December 2020

Identifiers

DOI

10.1093/DNARES/DSN008

1 reference

1 reference

1 reference

1 reference