The net of life: reconstructing the microbial phylogenetic network (Q22065750)

4 July 2017

title

The net of life: reconstructing the microbial phylogenetic network (English)

1 reference

4 July 2017

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Christos A Ouzounis

Christos A

Ouzounis

1 reference

4 July 2017

Victor Kunin

Victor

Kunin

1 reference

4 July 2017

Leon Goldovsky

Leon

Goldovsky

1 reference

4 July 2017

Nikos Darzentas

Nikos

Darzentas

1 reference

4 July 2017

language of work or name

English

0 references

publication date

17 June 2005

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4 July 2017

1 reference

4 July 2017

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4 July 2017

1 reference

4 July 2017

page(s)

954-959

1 reference

Measuring genome conservation across taxa: divided strains and united kingdoms

4 July 2017

cites work

1 reference

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19 March 2017

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19 March 2017

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Molecular keys to speciation: DNA polymorphism and the control of genetic exchange in enterobacteria

19 March 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

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Lateral Gene Transfer and the Origins of Prokaryotic Groups

19 March 2017

1 reference

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Genome sequence of the plant pathogen Ralstonia solanacearum

19 March 2017

1 reference

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A Genomic Perspective on Protein Families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

An efficient algorithm for large-scale detection of protein families

19 March 2017

1 reference

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Complete Genomic Sequence of Nitrogen-fixing Symbiotic Bacterium Bradyrhizobium japonicum USDA110

19 March 2017

1 reference

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The balance of driving forces during genome evolution in prokaryotes

19 March 2017

1 reference

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Host sanctions and the legume–rhizobium mutualism

19 March 2017

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

24 March 2017

1 reference

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Phylogenetic classification and the universal tree

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Genome phylogeny based on gene content

7 April 2017

1 reference

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Phylogenetic reconstruction and lateral gene transfer.

7 April 2017

1 reference

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Type III secretion system effector proteins: double agents in bacterial disease and plant defense

12 September 2017

1 reference

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Lessons learned from the genome analysis of ralstonia solanacearum.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Biased biological functions of horizontally transferred genes in prokaryotic genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

From a phylogenetic tree to a reticulated network

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

An evolutionary hot spot: the pNGR234b replicon of Rhizobium sp. strain NGR234

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

The small-world dynamics of tree networks and data mining in phyloinformatics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Universal trees based on large combined protein sequence data sets.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

The genomic tree as revealed from whole proteome comparisons

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Mosaic bacterial chromosomes: a challenge en route to a tree of genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Whole genome-based phylogenetic analysis of free-living microorganisms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Antimicrobial-resistant pathogens in the 1990s

27 September 2017

1 reference

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Optimal, efficient reconstruction of phylogenetic networks with constrained recombination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

Perfect phylogenetic networks with recombination.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1172039

SHOT: a web server for the construction of genome phylogenies

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15965028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GeneTRACE-reconstruction of gene content of ancestral species

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15965028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The phylogeny of prokaryotes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15965028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.3666505

1 reference

OpenCitations bibliographic resource ID

4 July 2017

4346309

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4346309

1 reference